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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11867 and 11868 are separated by 703 nucleotides
11868 and 11869 are separated by 405 nucleotides
11869 and 11870 are separated by 46 nucleotides
11870 and 11871 are separated by 404 nucleotides
mRNA_3499: 11867 - K00231 PPOX, hemY oxygen-dependent protoporphyrinogen oxidase, at 243,095 to 244,996
11867
mRNA_3500: 11868 - KOG2519 5'-3' exonuclease, at 245,700 to 248,074
11868
mRNA_3501: 11869 - KOG3791 Predicted RNA-binding protein involved in translational regulation, at 248,480 to 250,835
11869
mRNA_3502: 11870 - Hypothetical Protein, at 250,882 to 251,460
11870
mRNA_3503: 11871 - K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family, at 251,865 to 254,204
11871
Group
Condition
mRNA
_3499
mRNA
_3500
mRNA
_3501
mRNA
_3502
mRNA
_3503
11867
11868
11869
11870
11871
ypd buoyancy
40 hrs High Buoyancy
N.D.
-1.6
+0.3
N.D.
-0.1
auxotrophy
YNB Glucose
N.D.
-0.2
-1.3
N.D.
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.9
+1.0
N.D.
-0.2
auxotrophy
Dropout Complete
N.D.
-0.6
-0.5
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.9
-0.2
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
-0.4
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.5
+0.1
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.7
N.D.
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
-0.4
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
-0.2
N.D.
+0.0
growth on oleic acid
YNB Glucose
N.D.
+0.1
-0.5
N.D.
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
-0.2
N.D.
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
-0.0
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
+0.6
N.D.
+0.0
growth on ypd
YPD
N.D.
+0.2
+0.7
N.D.
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.5
+0.0
N.D.
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
+0.6
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+2.5
-0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+2.5
-0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+2.7
+0.2
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+3.0
+0.5
N.D.
+0.0
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