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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11868 and 11869 are separated by 405 nucleotides
11869 and 11870 are separated by 46 nucleotides
11870 and 11871 are separated by 404 nucleotides
11871 and 11872 are separated by 1176 nucleotides
mRNA_3500: 11868 - KOG2519 5'-3' exonuclease, at 245,700 to 248,074
11868
mRNA_3501: 11869 - KOG3791 Predicted RNA-binding protein involved in translational regulation, at 248,480 to 250,835
11869
mRNA_3502: 11870 - Hypothetical Protein, at 250,882 to 251,460
11870
mRNA_3503: 11871 - K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family, at 251,865 to 254,204
11871
mRNA_3504: 11872 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 255,381 to 257,476
11872
Group
Condition
mRNA
_3500
mRNA
_3501
mRNA
_3502
mRNA
_3503
mRNA
_3504
11868
11869
11870
11871
11872
ypd buoyancy
40 hrs High Buoyancy
-1.6
+0.3
N.D.
-0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-1.9
+1.0
N.D.
-0.2
-0.2
auxotrophy
YNB Glucose
-0.2
-1.3
N.D.
+0.3
+0.5
auxotrophy
Dropout Complete
-0.6
-0.5
N.D.
+0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.5
+0.1
N.D.
-0.0
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.4
N.D.
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.9
-0.2
N.D.
+0.3
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.2
N.D.
+0.0
-0.2
growth on oleic acid
YNB Oleic Acid
+0.1
-0.7
N.D.
+0.3
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.4
N.D.
+0.2
+0.4
growth on oleic acid
YNB Glucose
+0.1
-0.5
N.D.
+0.4
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-0.0
N.D.
+0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.2
N.D.
+0.0
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
+0.0
N.D.
-0.0
-0.1
growth on ypd
YPD
+0.2
+0.7
N.D.
-0.5
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.6
N.D.
+0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.6
N.D.
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+2.5
-0.1
N.D.
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+2.5
-0.1
N.D.
-0.2
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+2.7
+0.2
N.D.
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+3.0
+0.5
N.D.
+0.0
+0.0
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