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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11869 and 11870 are separated by 46 nucleotides
11870 and 11871 are separated by 404 nucleotides
11871 and 11872 are separated by 1176 nucleotides
11872 and 11873 are separated by 329 nucleotides
mRNA_3501: 11869 - KOG3791 Predicted RNA-binding protein involved in translational regulation, at 248,480 to 250,835
11869
mRNA_3502: 11870 - Hypothetical Protein, at 250,882 to 251,460
11870
mRNA_3503: 11871 - K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family, at 251,865 to 254,204
11871
mRNA_3504: 11872 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 255,381 to 257,476
11872
mRNA_3505: 11873 - KOG3699 Cytoskeletal protein Adducin, at 257,806 to 259,201
11873
Group
Condition
mRNA
_3501
mRNA
_3502
mRNA
_3503
mRNA
_3504
mRNA
_3505
11869
11870
11871
11872
11873
growth on oleic acid
YNB Oleic Acid
-0.7
N.D.
+0.3
+0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
N.D.
+0.1
-0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
+0.0
-0.2
+0.1
auxotrophy
YNB Glucose
-1.3
N.D.
+0.3
+0.5
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
-0.2
+0.4
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
N.D.
-0.0
-0.1
+0.1
growth on oleic acid
YNB Glucose
-0.5
N.D.
+0.4
+0.1
-0.0
auxotrophy
Dropout Complete
-0.5
N.D.
+0.2
+0.2
+0.1
growth on ypd
YPD
+0.7
N.D.
-0.5
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.0
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.1
+0.3
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
+0.0
+0.3
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+1.0
N.D.
-0.2
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.0
N.D.
+0.1
+0.0
+0.5
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
-0.1
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.4
N.D.
+0.2
+0.4
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
-0.1
+0.3
+0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.2
N.D.
+0.3
+0.6
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
N.D.
+0.0
+0.0
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
N.D.
+0.2
+0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.6
N.D.
+0.0
+0.2
+0.4
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