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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11870 and 11871 are separated by 404 nucleotides
11871 and 11872 are separated by 1176 nucleotides
11872 and 11873 are separated by 329 nucleotides
11873 and 11874 are separated by 432 nucleotides
mRNA_3502: 11870 - Hypothetical Protein, at 250,882 to 251,460
11870
mRNA_3503: 11871 - K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family, at 251,865 to 254,204
11871
mRNA_3504: 11872 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 255,381 to 257,476
11872
mRNA_3505: 11873 - KOG3699 Cytoskeletal protein Adducin, at 257,806 to 259,201
11873
mRNA_3506: 11874 - HMMPfam-Asp/Glu/Hydantoin racemase-PF01177, at 259,634 to 260,419
11874
Group
Condition
mRNA
_3502
mRNA
_3503
mRNA
_3504
mRNA
_3505
mRNA
_3506
11870
11871
11872
11873
11874
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.2
-0.1
-3.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.0
-0.1
+0.1
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
-0.2
+0.1
-0.5
growth on ypd
YPD
N.D.
-0.5
+0.1
-0.2
+0.4
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
+0.2
-0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.0
-0.2
+0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
-0.0
+0.2
-0.1
growth on oleic acid
YNB Glucose
N.D.
+0.4
+0.1
-0.0
-0.3
auxotrophy
Dropout Complete
N.D.
+0.2
+0.2
+0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
+0.2
+0.4
-0.4
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
+0.0
+0.5
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.0
+0.3
+0.4
-0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.1
+0.3
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
+0.1
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.2
+0.4
-0.3
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.3
+0.4
+0.1
auxotrophy
YNB Glucose
N.D.
+0.3
+0.5
+0.3
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
+0.4
+0.5
-0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.3
+0.6
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.0
+0.0
+0.5
+0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
+0.3
+0.5
+0.8
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