Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
11871 and 11872 are separated by 1176 nucleotides
11872 and 11873 are separated by 329 nucleotides
11873 and 11874 are separated by 432 nucleotides
11874 and 11875 are separated by 214 nucleotides
mRNA_3503: 11871 - K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family, at 251,865 to 254,204
11871
mRNA_3504: 11872 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 255,381 to 257,476
11872
mRNA_3505: 11873 - KOG3699 Cytoskeletal protein Adducin, at 257,806 to 259,201
11873
mRNA_3506: 11874 - HMMPfam-Asp/Glu/Hydantoin racemase-PF01177, at 259,634 to 260,419
11874
mRNA_3507: 11875 - K12251 aguB N-carbamoylputrescine amidase, at 260,634 to 261,961
11875
Group
Condition
mRNA
_3503
mRNA
_3504
mRNA
_3505
mRNA
_3506
mRNA
_3507
11871
11872
11873
11874
11875
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.2
-0.1
-3.5
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.2
+0.1
-0.5
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.1
+0.1
-0.5
+0.1
growth on ypd
YPD
-0.5
+0.1
-0.2
+0.4
-0.1
growth on oleic acid
YNB Oleic Acid
+0.3
+0.2
-0.2
-0.3
-0.1
growth on oleic acid
YNB Glucose
+0.4
+0.1
-0.0
-0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.0
+0.2
-0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.2
+0.1
+0.1
+0.1
auxotrophy
Dropout Complete
+0.2
+0.2
+0.1
-0.3
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
+0.3
+0.0
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.3
+0.4
-0.4
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.2
+0.4
-0.4
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.1
+0.3
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.0
+0.5
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.4
-0.3
+0.5
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.3
+0.4
+0.1
+0.2
auxotrophy
YNB Glucose
+0.3
+0.5
+0.3
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.4
+0.5
-0.0
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.6
+0.4
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.0
+0.5
+0.6
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.3
+0.5
+0.8
+0.2
remove
mRNA_3503
plot
remove
mRNA_3504
plot
remove
mRNA_3505
remove
mRNA_3506
plot
remove
mRNA_3507
plot