Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 11872 and 11873 are separated by 329 nucleotides11873 and 11874 are separated by 432 nucleotides11874 and 11875 are separated by 214 nucleotides11875 and 11876 are separated by 198 nucleotides mRNA_3504: 11872 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 255,381 to 257,476 11872 mRNA_3505: 11873 - KOG3699 Cytoskeletal protein Adducin, at 257,806 to 259,201 11873 mRNA_3506: 11874 - HMMPfam-Asp/Glu/Hydantoin racemase-PF01177, at 259,634 to 260,419 11874 mRNA_3507: 11875 - K12251 aguB N-carbamoylputrescine amidase, at 260,634 to 261,961 11875 mRNA_3508: 11876 - K00273 DAO, aao D-amino-acid oxidase, at 262,160 to 263,731 11876
Group Condition mRNA_3504 mRNA_3505 mRNA_3506 mRNA_3507 mRNA_3508
11872 11873 11874 11875 11876
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 -0.1 -3.5 -0.2 -0.3
facs on lipid accumulation Sorted Low BODIPY Gate -0.2 +0.1 -0.5 -0.2 -0.3
growth on oleic acid YNB Oleic Acid +0.2 -0.2 -0.3 -0.1 -0.2
facs on lipid accumulation Sorted High BODIPY Gate -0.1 +0.1 -0.5 +0.1 +0.1
growth on oleic acid YNB Glucose +0.1 -0.0 -0.3 -0.1 -0.0
auxotrophy Dropout Complete +0.2 +0.1 -0.3 +0.0 -0.1
ypd buoyancy 40 hrs Low Buoyancy +0.2 +0.4 -0.4 +0.1 -0.0
growth on ricinoleic acid YNB Methylricinoleic Acid +0.3 +0.4 -0.4 -0.1 +0.1
ypd buoyancy 40 hrs Median Buoyancy -0.0 +0.2 -0.1 +0.0 +0.3
growth on ricinoleic acid YNB Ricinoleic Acid +0.1 +0.3 -0.1 -0.1 +0.2
facs on lipid accumulation Sorted No BODIPY Gate -0.2 +0.1 +0.1 +0.1 +0.3
ypd buoyancy 40 hrs High Buoyancy +0.1 +0.3 +0.0 -0.1 +0.1
growth on ricinoleic acid YNB Glucose +0.0 +0.5 -0.3 +0.2 -0.0
auxotrophy YNB Glucose +0.5 +0.3 -0.1 +0.0 -0.1
growth on ypd YPD +0.1 -0.2 +0.4 -0.1 +0.4
auxotrophy YNB Glucose 75mM Arginine +0.6 +0.4 -0.1 +0.0 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.4 -0.3 +0.5 +0.2 -0.1
auxotrophy YNB Glucose 75mM Methionine +0.4 +0.5 -0.0 +0.0 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.3 +0.4 +0.1 +0.2 -0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.0 +0.5 +0.6 +0.3 -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.3 +0.5 +0.8 +0.2 -0.1
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