Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 11876 and 11877 are separated by 181 nucleotides11877 and 11878 are separated by 372 nucleotides11878 and 11879 are separated by 2331 nucleotides11879 and 11880 are separated by 43 nucleotides mRNA_3508: 11876 - K00273 DAO, aao D-amino-acid oxidase, at 262,160 to 263,731 11876 mRNA_3509: 11877 - K01464 DPYS, dht, hydA dihydropyrimidinase, at 263,913 to 265,913 11877 mRNA_3510: 11878 - K00889 PIP5K 1-phosphatidylinositol-4-phosphate 5-kinase, at 266,286 to 268,239 11878 mRNA_3511: 11879 - K10875 RAD54L, RAD54 DNA repair and recombination protein RAD54 and RAD54-like protein, at 270,571 to 274,030 11879 mRNA_3512: 11880 - K10873 RAD52 DNA repair and recombination protein RAD52, at 274,074 to 276,108 11880
Group Condition mRNA_3508 mRNA_3509 mRNA_3510 mRNA_3511 mRNA_3512
11876 11877 11878 11879 11880
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 -0.0 N.D. -1.8 -0.2
ypd buoyancy 40 hrs No Buoyancy Separation -0.3 -0.8 N.D. -1.4 +0.3
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.1 -0.6 N.D. -1.3 +0.1
auxotrophy YNB Glucose 75mM Methionine -0.1 -0.4 N.D. -1.1 -0.2
growth on oleic acid YNB Oleic Acid -0.2 -0.0 N.D. -1.6 +0.1
growth on oleic acid YNB Glucose -0.0 -0.1 N.D. -1.4 +0.0
ypd buoyancy 40 hrs High Buoyancy +0.1 -0.1 N.D. -1.6 +0.2
auxotrophy Dropout Complete -0.1 +0.1 N.D. -1.1 -0.3
auxotrophy YNB Glucose 75mM Arginine -0.2 -0.3 N.D. -0.5 -0.3
growth on ypd YPD +0.4 -0.5 N.D. -0.9 +0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 -0.2 N.D. -0.8 +0.4
ypd buoyancy 40 hrs Low Buoyancy -0.0 -0.1 N.D. -0.8 +0.2
auxotrophy YNB Glucose -0.1 -0.1 N.D. -0.5 -0.1
growth on ricinoleic acid YNB Glucose -0.0 +0.1 N.D. -0.5 +0.0
facs on lipid accumulation Sorted No BODIPY Gate +0.3 -0.4 N.D. +0.0 -0.3
facs on lipid accumulation Sorted Low BODIPY Gate -0.3 -0.5 N.D. +0.7 +0.0
ypd buoyancy 40 hrs Median Buoyancy +0.3 +0.3 N.D. -0.5 +0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 -0.2 N.D. +0.0 +0.6
growth on ricinoleic acid YNB Methylricinoleic Acid +0.1 +0.0 N.D. +0.2 +0.1
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 +0.4 N.D. +0.5 -0.3
facs on lipid accumulation Sorted High BODIPY Gate +0.1 +0.1 N.D. +0.7 -0.0
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