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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11876 and 11877 are separated by 181 nucleotides
11877 and 11878 are separated by 372 nucleotides
11878 and 11879 are separated by 2331 nucleotides
11879 and 11880 are separated by 43 nucleotides
mRNA_3508: 11876 - K00273 DAO, aao D-amino-acid oxidase, at 262,160 to 263,731
11876
mRNA_3509: 11877 - K01464 DPYS, dht, hydA dihydropyrimidinase, at 263,913 to 265,913
11877
mRNA_3510: 11878 - K00889 PIP5K 1-phosphatidylinositol-4-phosphate 5-kinase, at 266,286 to 268,239
11878
mRNA_3511: 11879 - K10875 RAD54L, RAD54 DNA repair and recombination protein RAD54 and RAD54-like protein, at 270,571 to 274,030
11879
mRNA_3512: 11880 - K10873 RAD52 DNA repair and recombination protein RAD52, at 274,074 to 276,108
11880
Group
Condition
mRNA
_3508
mRNA
_3509
mRNA
_3510
mRNA
_3511
mRNA
_3512
11876
11877
11878
11879
11880
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.0
N.D.
-1.8
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.8
N.D.
-1.4
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.6
N.D.
-1.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.4
N.D.
-1.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.2
-0.0
N.D.
-1.6
+0.1
growth on oleic acid
YNB Glucose
-0.0
-0.1
N.D.
-1.4
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
N.D.
-1.6
+0.2
auxotrophy
Dropout Complete
-0.1
+0.1
N.D.
-1.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.3
N.D.
-0.5
-0.3
growth on ypd
YPD
+0.4
-0.5
N.D.
-0.9
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.2
N.D.
-0.8
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
N.D.
-0.8
+0.2
auxotrophy
YNB Glucose
-0.1
-0.1
N.D.
-0.5
-0.1
growth on ricinoleic acid
YNB Glucose
-0.0
+0.1
N.D.
-0.5
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.4
N.D.
+0.0
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.5
N.D.
+0.7
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.3
N.D.
-0.5
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.2
N.D.
+0.0
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.0
N.D.
+0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.4
N.D.
+0.5
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.1
N.D.
+0.7
-0.0
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