Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 11877 and 11878 are separated by 372 nucleotides11878 and 11879 are separated by 2331 nucleotides11879 and 11880 are separated by 43 nucleotides11880 and 11881 are separated by 1646 nucleotides mRNA_3509: 11877 - K01464 DPYS, dht, hydA dihydropyrimidinase, at 263,913 to 265,913 11877 mRNA_3510: 11878 - K00889 PIP5K 1-phosphatidylinositol-4-phosphate 5-kinase, at 266,286 to 268,239 11878 mRNA_3511: 11879 - K10875 RAD54L, RAD54 DNA repair and recombination protein RAD54 and RAD54-like protein, at 270,571 to 274,030 11879 mRNA_3512: 11880 - K10873 RAD52 DNA repair and recombination protein RAD52, at 274,074 to 276,108 11880 mRNA_3513: 11881 - K11718 HUGT UDP-glucose-glycoprotein glucosyltransferase, at 277,755 to 283,906 11881
Group Condition mRNA_3509 mRNA_3510 mRNA_3511 mRNA_3512 mRNA_3513
11877 11878 11879 11880 11881
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.6 N.D. -1.3 +0.1 -0.3
ypd buoyancy 40 hrs No Buoyancy Separation -0.8 N.D. -1.4 +0.3 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.0 N.D. -1.8 -0.2 +0.1
auxotrophy YNB Glucose 75mM Methionine -0.4 N.D. -1.1 -0.2 -0.1
growth on oleic acid YNB Glucose -0.1 N.D. -1.4 +0.0 +0.0
growth on oleic acid YNB Oleic Acid -0.0 N.D. -1.6 +0.1 +0.1
growth on ypd YPD -0.5 N.D. -0.9 +0.0 -0.1
ypd buoyancy 40 hrs High Buoyancy -0.1 N.D. -1.6 +0.2 +0.2
auxotrophy Dropout Complete +0.1 N.D. -1.1 -0.3 -0.0
auxotrophy YNB Glucose 75mM Arginine -0.3 N.D. -0.5 -0.3 -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.2 N.D. -0.8 +0.4 -0.1
auxotrophy YNB Glucose -0.1 N.D. -0.5 -0.1 -0.1
ypd buoyancy 40 hrs Low Buoyancy -0.1 N.D. -0.8 +0.2 +0.1
growth on ricinoleic acid YNB Glucose +0.1 N.D. -0.5 +0.0 -0.2
facs on lipid accumulation Sorted No BODIPY Gate -0.4 N.D. +0.0 -0.3 +0.2
ypd buoyancy 40 hrs Median Buoyancy +0.3 N.D. -0.5 +0.2 -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid +0.0 N.D. +0.2 +0.1 -0.1
facs on lipid accumulation Sorted High BODIPY Gate +0.1 N.D. +0.7 -0.0 -0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 N.D. +0.0 +0.6 +0.1
facs on lipid accumulation Sorted Low BODIPY Gate -0.5 N.D. +0.7 +0.0 +0.3
growth on ricinoleic acid YNB Ricinoleic Acid +0.4 N.D. +0.5 -0.3 -0.1
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