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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11879 and 11880 are separated by 43 nucleotides
11880 and 11881 are separated by 1646 nucleotides
11881 and 11882 are separated by 210 nucleotides
11882 and 11883 are separated by 425 nucleotides
mRNA_3511: 11879 - K10875 RAD54L, RAD54 DNA repair and recombination protein RAD54 and RAD54-like protein, at 270,571 to 274,030
11879
mRNA_3512: 11880 - K10873 RAD52 DNA repair and recombination protein RAD52, at 274,074 to 276,108
11880
mRNA_3513: 11881 - K11718 HUGT UDP-glucose-glycoprotein glucosyltransferase, at 277,755 to 283,906
11881
mRNA_3514: 11882 - K18097 GCY1 glycerol 2-dehydrogenase (NADP+), at 284,117 to 285,391
11882
mRNA_3515: 11883 - K01277 DPP3 dipeptidyl-peptidase III, at 285,817 to 288,339
11883
Group
Condition
mRNA
_3511
mRNA
_3512
mRNA
_3513
mRNA
_3514
mRNA
_3515
11879
11880
11881
11882
11883
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.8
-0.2
+0.1
-0.1
-0.8
growth on ypd
YPD
-0.9
+0.0
-0.1
+0.1
-0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.3
+0.1
-0.3
+0.2
-0.3
growth on oleic acid
YNB Oleic Acid
-1.6
+0.1
+0.1
+0.7
-0.4
ypd buoyancy
40 hrs High Buoyancy
-1.6
+0.2
+0.2
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.8
+0.4
-0.1
+0.1
-0.7
growth on oleic acid
YNB Glucose
-1.4
+0.0
+0.0
+0.6
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-1.1
-0.2
-0.1
+0.5
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-1.4
+0.3
-0.1
+0.5
+0.0
auxotrophy
Dropout Complete
-1.1
-0.3
-0.0
+0.3
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.7
+0.0
+0.3
-0.1
-1.6
auxotrophy
YNB Glucose 75mM Arginine
-0.5
-0.3
-0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
-0.5
+0.0
-0.2
+0.3
-0.0
auxotrophy
YNB Glucose
-0.5
-0.1
-0.1
+0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.5
+0.2
-0.2
-0.0
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.8
+0.2
+0.1
+0.0
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.3
+0.2
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.6
+0.1
-0.0
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.1
-0.1
+0.5
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
-0.0
-0.3
-0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.3
-0.1
+0.8
+0.1
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