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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11882 and 11883 are separated by 425 nucleotides
11883 and 11884 are separated by 236 nucleotides
11884 and 11885 are separated by 202 nucleotides
11885 and 11886 are separated by 64 nucleotides
mRNA_3514: 11882 - K18097 GCY1 glycerol 2-dehydrogenase (NADP+), at 284,117 to 285,391
11882
mRNA_3515: 11883 - K01277 DPP3 dipeptidyl-peptidase III, at 285,817 to 288,339
11883
mRNA_3516: 11884 - K01466 allB allantoinase, at 288,576 to 290,377
11884
mRNA_3517: 11885 - K06677 YCS4, CNAP1, CAPD2 condensin complex subunit 1, at 290,580 to 295,754
11885
mRNA_3518: 11886 - K12275 SEC62 translocation protein SEC62, at 295,819 to 296,849
11886
Group
Condition
mRNA
_3514
mRNA
_3515
mRNA
_3516
mRNA
_3517
mRNA
_3518
11882
11883
11884
11885
11886
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.8
-0.5
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-1.6
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.7
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.4
+0.0
N.D.
N.D.
growth on ypd
YPD
+0.1
-0.9
+0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.3
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.1
+0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.4
+0.6
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.2
+0.5
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.6
+0.0
+0.2
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.7
-0.4
+0.8
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.0
+0.7
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.3
-0.0
+1.0
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.3
+1.0
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.4
+1.1
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.8
+0.1
+0.6
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
+1.6
N.D.
N.D.
auxotrophy
YNB Glucose
+0.3
-0.1
+1.5
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
+1.7
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.1
+1.4
N.D.
N.D.
auxotrophy
Dropout Complete
+0.3
+0.5
+1.2
N.D.
N.D.
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