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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11883 and 11884 are separated by 236 nucleotides
11884 and 11885 are separated by 202 nucleotides
11885 and 11886 are separated by 64 nucleotides
11886 and 11887 are separated by 588 nucleotides
mRNA_3515: 11883 - K01277 DPP3 dipeptidyl-peptidase III, at 285,817 to 288,339
11883
mRNA_3516: 11884 - K01466 allB allantoinase, at 288,576 to 290,377
11884
mRNA_3517: 11885 - K06677 YCS4, CNAP1, CAPD2 condensin complex subunit 1, at 290,580 to 295,754
11885
mRNA_3518: 11886 - K12275 SEC62 translocation protein SEC62, at 295,819 to 296,849
11886
mRNA_3519: 11887 - KOG4686 Predicted sugar transporter, at 297,438 to 299,524
11887
Group
Condition
mRNA
_3515
mRNA
_3516
mRNA
_3517
mRNA
_3518
mRNA
_3519
11883
11884
11885
11886
11887
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.8
-0.5
N.D.
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.7
-0.2
N.D.
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.6
+0.3
N.D.
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.0
N.D.
N.D.
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.6
N.D.
N.D.
-0.5
growth on ypd
YPD
-0.9
+0.5
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.2
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.7
N.D.
N.D.
-0.3
growth on oleic acid
YNB Oleic Acid
-0.4
+0.8
N.D.
N.D.
+0.2
growth on ricinoleic acid
YNB Glucose
-0.0
+1.0
N.D.
N.D.
-0.3
growth on oleic acid
YNB Glucose
+0.0
+0.2
N.D.
N.D.
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.5
N.D.
N.D.
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.6
N.D.
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.5
N.D.
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+1.0
N.D.
N.D.
-0.0
auxotrophy
YNB Glucose
-0.1
+1.5
N.D.
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+1.4
N.D.
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.1
+1.6
N.D.
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+1.1
N.D.
N.D.
+0.3
auxotrophy
Dropout Complete
+0.5
+1.2
N.D.
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+1.7
N.D.
N.D.
+0.3
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