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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11884 and 11885 are separated by 202 nucleotides
11885 and 11886 are separated by 64 nucleotides
11886 and 11887 are separated by 588 nucleotides
11887 and 11888 are separated by 275 nucleotides
mRNA_3516: 11884 - K01466 allB allantoinase, at 288,576 to 290,377
11884
mRNA_3517: 11885 - K06677 YCS4, CNAP1, CAPD2 condensin complex subunit 1, at 290,580 to 295,754
11885
mRNA_3518: 11886 - K12275 SEC62 translocation protein SEC62, at 295,819 to 296,849
11886
mRNA_3519: 11887 - KOG4686 Predicted sugar transporter, at 297,438 to 299,524
11887
mRNA_3520: 11888 - BLAST mannose-6-phosphate isomerase, class I [Kwoniella..., at 299,800 to 300,733
11888
Group
Condition
mRNA
_3516
mRNA
_3517
mRNA
_3518
mRNA
_3519
mRNA
_3520
11884
11885
11886
11887
11888
growth on oleic acid
YNB Glucose
+0.2
N.D.
N.D.
+0.4
-1.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
N.D.
N.D.
+0.1
-1.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
N.D.
N.D.
-0.5
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
N.D.
N.D.
-0.3
-1.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
N.D.
N.D.
-0.0
+0.1
growth on ricinoleic acid
YNB Glucose
+1.0
N.D.
N.D.
-0.3
-0.8
growth on oleic acid
YNB Oleic Acid
+0.8
N.D.
N.D.
+0.2
-1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
N.D.
-0.1
+1.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
N.D.
N.D.
+0.1
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+1.4
N.D.
N.D.
+0.0
-0.5
growth on ypd
YPD
+0.5
N.D.
N.D.
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
N.D.
+0.2
+0.5
ypd buoyancy
40 hrs Low Buoyancy
+1.0
N.D.
N.D.
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
N.D.
N.D.
+0.0
+1.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
N.D.
N.D.
+0.3
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+1.7
N.D.
N.D.
+0.3
-0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
N.D.
N.D.
+0.2
+0.7
auxotrophy
Dropout Complete
+1.2
N.D.
N.D.
+0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+1.1
N.D.
N.D.
+0.3
+0.0
auxotrophy
YNB Glucose
+1.5
N.D.
N.D.
+0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
+1.6
N.D.
N.D.
+0.1
+1.0
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