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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11889 and 11890 are separated by 709 nucleotides
11890 and 11891 are separated by 363 nucleotides
11891 and 11892 are separated by 432 nucleotides
11892 and 11893 are separated by 294 nucleotides
mRNA_3521: 11889 - K02900 RP-L27Ae, RPL27A large subunit ribosomal protein L27Ae, at 302,044 to 303,082
11889
mRNA_3522: 11890 - K03008 RPB11, POLR2J DNA-directed RNA polymerase II subunit RPB11, at 303,792 to 304,536
11890
mRNA_3523: 11891 - K08064 NFYA nuclear transcription factor Y, alpha, at 304,900 to 306,087
11891
mRNA_3524: 11892 - Hypothetical Protein, at 306,520 to 307,367
11892
mRNA_3525: 11893 - K08139 HXT MFS transporter, SP family, sugar-H+ symporter, at 307,662 to 311,002
11893
Group
Condition
mRNA
_3521
mRNA
_3522
mRNA
_3523
mRNA
_3524
mRNA
_3525
11889
11890
11891
11892
11893
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-2.0
+0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
-0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.9
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.5
+0.2
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.9
+0.2
+0.2
growth on ypd
YPD
N.D.
N.D.
-0.2
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.2
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.4
+0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.0
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.0
+0.2
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.2
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.0
+0.1
-0.1
auxotrophy
YNB Glucose
N.D.
N.D.
-0.1
-0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.3
+0.2
+0.1
auxotrophy
Dropout Complete
N.D.
N.D.
-0.2
+0.2
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.3
-0.0
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.2
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.4
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.3
-0.0
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.3
+0.2
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+2.0
-0.1
-0.2
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