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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11891 and 11892 are separated by 432 nucleotides
11892 and 11893 are separated by 294 nucleotides
11893 and 11894 are separated by 723 nucleotides
11894 and 11895 are separated by 528 nucleotides
mRNA_3523: 11891 - K08064 NFYA nuclear transcription factor Y, alpha, at 304,900 to 306,087
11891
mRNA_3524: 11892 - Hypothetical Protein, at 306,520 to 307,367
11892
mRNA_3525: 11893 - K08139 HXT MFS transporter, SP family, sugar-H+ symporter, at 307,662 to 311,002
11893
mRNA_3526: 11894 - K06666 TUP1 glucose repression regulatory protein TUP1, at 311,726 to 314,497
11894
mRNA_3527: 11895 - K08658 RCE1, FACE2 prenyl protein peptidase, at 315,026 to 316,520
11895
Group
Condition
mRNA
_3523
mRNA
_3524
mRNA
_3525
mRNA
_3526
mRNA
_3527
11891
11892
11893
11894
11895
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-2.0
+0.1
+0.2
N.D.
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.1
-0.3
N.D.
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
+0.1
+0.2
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.1
-0.1
N.D.
-0.7
auxotrophy
YNB Glucose
-0.1
-0.0
+0.1
N.D.
-0.7
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.2
-0.3
N.D.
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
-0.1
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
+0.2
-0.3
N.D.
+0.1
auxotrophy
Dropout Complete
-0.2
+0.2
+0.1
N.D.
-0.3
growth on ypd
YPD
-0.2
-0.1
-0.3
N.D.
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.0
+0.1
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.2
-0.0
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.9
+0.2
+0.2
N.D.
+0.4
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
-0.1
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.0
+0.0
N.D.
-0.4
growth on oleic acid
YNB Glucose
+0.3
-0.0
-0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
+0.2
+0.2
-0.1
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.2
+0.1
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.0
+0.2
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.2
+0.1
N.D.
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+2.0
-0.1
-0.2
N.D.
+0.1
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