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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11893 and 11894 are separated by 723 nucleotides
11894 and 11895 are separated by 528 nucleotides
11895 and 11896 are separated by 266 nucleotides
11896 and 11897 are separated by 445 nucleotides
mRNA_3525: 11893 - K08139 HXT MFS transporter, SP family, sugar-H+ symporter, at 307,662 to 311,002
11893
mRNA_3526: 11894 - K06666 TUP1 glucose repression regulatory protein TUP1, at 311,726 to 314,497
11894
mRNA_3527: 11895 - K08658 RCE1, FACE2 prenyl protein peptidase, at 315,026 to 316,520
11895
mRNA_3528: 11896 - Hypothetical Protein, at 316,787 to 317,613
11896
mRNA_3529: 11897 - Hypothetical Protein, at 318,059 to 319,264
11897
Group
Condition
mRNA
_3525
mRNA
_3526
mRNA
_3527
mRNA
_3528
mRNA
_3529
11893
11894
11895
11896
11897
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
-0.4
+0.1
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
-0.7
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
N.D.
-0.5
+0.4
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
-0.2
+0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
-0.4
+0.2
+0.1
auxotrophy
Dropout Complete
+0.1
N.D.
-0.3
+0.4
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
N.D.
+0.1
-0.3
+0.2
growth on oleic acid
YNB Glucose
-0.1
N.D.
+0.1
+0.2
-0.2
auxotrophy
YNB Glucose
+0.1
N.D.
-0.7
+0.6
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
-0.3
+0.1
+0.1
growth on ypd
YPD
-0.3
N.D.
+0.3
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
N.D.
+0.1
-0.1
+0.3
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
-0.1
+0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
-0.1
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
+0.2
-0.2
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
N.D.
+0.0
+0.4
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
+0.3
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
+0.2
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
+0.5
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
+0.4
+0.3
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
+0.5
+0.2
+0.3
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