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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11894 and 11895 are separated by 528 nucleotides
11895 and 11896 are separated by 266 nucleotides
11896 and 11897 are separated by 445 nucleotides
11897 and 11898 are separated by 614 nucleotides
mRNA_3526: 11894 - K06666 TUP1 glucose repression regulatory protein TUP1, at 311,726 to 314,497
11894
mRNA_3527: 11895 - K08658 RCE1, FACE2 prenyl protein peptidase, at 315,026 to 316,520
11895
mRNA_3528: 11896 - Hypothetical Protein, at 316,787 to 317,613
11896
mRNA_3529: 11897 - Hypothetical Protein, at 318,059 to 319,264
11897
mRNA_3530: 11898 - K14007 SEC24 protein transport protein SEC24, at 319,879 to 322,720
11898
Group
Condition
mRNA
_3526
mRNA
_3527
mRNA
_3528
mRNA
_3529
mRNA
_3530
11894
11895
11896
11897
11898
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.4
+0.1
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.7
+0.1
-0.1
N.D.
auxotrophy
Dropout Complete
N.D.
-0.3
+0.4
-0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.5
+0.4
-0.1
N.D.
auxotrophy
YNB Glucose
N.D.
-0.7
+0.6
+0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.3
+0.1
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.4
+0.2
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
-0.3
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
+0.2
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
-0.1
+0.2
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.1
+0.2
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
-0.2
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
+0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
-0.1
+0.3
N.D.
growth on ypd
YPD
N.D.
+0.3
-0.3
+0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.0
+0.4
-0.0
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
+0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
+0.3
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.5
+0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.4
+0.3
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.5
+0.2
+0.3
N.D.
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