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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11896 and 11897 are separated by 445 nucleotides
11897 and 11898 are separated by 614 nucleotides
11898 and 11899 are separated by 1365 nucleotides
11899 and 11900 are separated by 116 nucleotides
mRNA_3528: 11896 - Hypothetical Protein, at 316,787 to 317,613
11896
mRNA_3529: 11897 - Hypothetical Protein, at 318,059 to 319,264
11897
mRNA_3530: 11898 - K14007 SEC24 protein transport protein SEC24, at 319,879 to 322,720
11898
mRNA_3531: 11899 - K00604 MTFMT, fmt methionyl-tRNA formyltransferase, at 324,086 to 325,765
11899
mRNA_3532: 11900 - K00670 NAA30, MAK3 N-alpha-acetyltransferase 30, at 325,882 to 326,936
11900
Group
Condition
mRNA
_3528
mRNA
_3529
mRNA
_3530
mRNA
_3531
mRNA
_3532
11896
11897
11898
11899
11900
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.1
N.D.
N.D.
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
N.D.
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.5
N.D.
N.D.
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.1
N.D.
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
N.D.
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.0
N.D.
N.D.
+0.0
growth on ypd
YPD
-0.3
+0.3
N.D.
N.D.
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.0
N.D.
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.3
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
N.D.
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.2
N.D.
N.D.
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
N.D.
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.0
N.D.
N.D.
+0.2
growth on oleic acid
YNB Glucose
+0.2
-0.2
N.D.
N.D.
+0.6
auxotrophy
Dropout Complete
+0.4
-0.4
N.D.
N.D.
+0.7
growth on ricinoleic acid
YNB Glucose
+0.2
+0.1
N.D.
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.2
N.D.
N.D.
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.2
N.D.
N.D.
+0.8
auxotrophy
YNB Glucose
+0.6
+0.0
N.D.
N.D.
+0.7
growth on oleic acid
YNB Oleic Acid
+0.1
-0.0
N.D.
N.D.
+1.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.3
N.D.
N.D.
+1.4
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