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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11897 and 11898 are separated by 614 nucleotides
11898 and 11899 are separated by 1365 nucleotides
11899 and 11900 are separated by 116 nucleotides
11900 and 11901 are separated by 159 nucleotides
mRNA_3529: 11897 - Hypothetical Protein, at 318,059 to 319,264
11897
mRNA_3530: 11898 - K14007 SEC24 protein transport protein SEC24, at 319,879 to 322,720
11898
mRNA_3531: 11899 - K00604 MTFMT, fmt methionyl-tRNA formyltransferase, at 324,086 to 325,765
11899
mRNA_3532: 11900 - K00670 NAA30, MAK3 N-alpha-acetyltransferase 30, at 325,882 to 326,936
11900
mRNA_3533: 11901 - K08337 ATG7 ubiquitin-like modifier-activating enzyme ATG7, at 327,096 to 329,991
11901
Group
Condition
mRNA
_3529
mRNA
_3530
mRNA
_3531
mRNA
_3532
mRNA
_3533
11897
11898
11899
11900
11901
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
N.D.
N.D.
-0.0
-3.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
N.D.
+0.0
-2.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
N.D.
+0.0
-2.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
N.D.
-0.5
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
N.D.
N.D.
+0.2
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
N.D.
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.5
N.D.
N.D.
+0.4
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
N.D.
+0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
N.D.
+0.0
+0.0
growth on ypd
YPD
+0.3
N.D.
N.D.
+0.2
-0.3
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
N.D.
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
N.D.
N.D.
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
N.D.
+0.5
+0.1
auxotrophy
Dropout Complete
-0.4
N.D.
N.D.
+0.7
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
N.D.
+0.8
-0.2
auxotrophy
YNB Glucose
+0.0
N.D.
N.D.
+0.7
+0.2
growth on oleic acid
YNB Glucose
-0.2
N.D.
N.D.
+0.6
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
N.D.
+0.4
+0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
N.D.
N.D.
+0.5
+1.2
growth on oleic acid
YNB Oleic Acid
-0.0
N.D.
N.D.
+1.3
+0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
N.D.
N.D.
+1.4
+0.4
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