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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11899 and 11900 are separated by 116 nucleotides
11900 and 11901 are separated by 159 nucleotides
11901 and 11902 are separated by 984 nucleotides
11902 and 11903 are separated by 237 nucleotides
mRNA_3531: 11899 - K00604 MTFMT, fmt methionyl-tRNA formyltransferase, at 324,086 to 325,765
11899
mRNA_3532: 11900 - K00670 NAA30, MAK3 N-alpha-acetyltransferase 30, at 325,882 to 326,936
11900
mRNA_3533: 11901 - K08337 ATG7 ubiquitin-like modifier-activating enzyme ATG7, at 327,096 to 329,991
11901
mRNA_3534: 11902 - Hypothetical Protein, at 330,976 to 331,488
11902
mRNA_3535: 11903 - HMMPfam-Protein of unknown function (DUF2419)-PF10343, at 331,726 to 332,711
11903
Group
Condition
mRNA
_3531
mRNA
_3532
mRNA
_3533
mRNA
_3534
mRNA
_3535
11899
11900
11901
11902
11903
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
-2.4
-0.2
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.0
-3.1
+0.4
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.5
-0.3
-1.0
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.0
-2.1
+0.3
+0.4
growth on ypd
YPD
N.D.
+0.2
-0.3
+0.0
-0.8
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.1
-0.0
-0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.2
+0.1
-0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
-0.1
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.5
-0.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
+0.0
+0.4
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.8
-0.2
+0.1
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.4
-0.1
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.5
+0.1
+0.7
-0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.4
-0.0
+0.6
-0.1
auxotrophy
Dropout Complete
N.D.
+0.7
+0.2
+0.1
-0.2
growth on oleic acid
YNB Glucose
N.D.
+0.6
+0.6
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.4
+0.7
+0.1
+0.0
auxotrophy
YNB Glucose
N.D.
+0.7
+0.2
+0.5
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+1.4
+0.4
+0.4
-0.8
growth on oleic acid
YNB Oleic Acid
N.D.
+1.3
+0.7
+0.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.5
+1.2
+0.3
+0.5
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