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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11906 and 11907 are separated by 1903 nucleotides
11907 and 11908 are separated by 384 nucleotides
11908 and 11909 are separated by 185 nucleotides
11909 and 11910 are separated by 256 nucleotides
mRNA_3538: 11906 - BLAST TPR-like protein [Sanghuangporus baumii], at 2,213 to 2,737
11906
mRNA_3539: 11907 - K12663 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, at 4,641 to 6,092
11907
mRNA_3540: 11908 - K00784 rnz ribonuclease Z, at 6,477 to 8,169
11908
mRNA_3541: 11909 - K01754 E4.3.1.19, ilvA, tdcB threonine dehydratase, at 8,355 to 10,759
11909
mRNA_3542: 11910 - K01597 MVD, mvaD diphosphomevalonate decarboxylase, at 11,016 to 12,700
11910
Group
Condition
mRNA
_3538
mRNA
_3539
mRNA
_3540
mRNA
_3541
mRNA
_3542
11906
11907
11908
11909
11910
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.0
-0.5
-2.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
-0.1
-0.1
-1.9
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-1.0
-0.1
-0.5
-0.7
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-1.2
-0.6
-0.6
N.D.
growth on oleic acid
YNB Glucose
-0.3
-0.4
-0.2
-1.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.1
-0.2
-1.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.1
-0.5
-0.6
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
+0.0
-1.0
N.D.
auxotrophy
Dropout Complete
-0.6
-0.3
-0.3
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.0
+0.5
-1.3
N.D.
auxotrophy
YNB Glucose
-0.4
-0.2
+0.1
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
+0.1
-0.5
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-0.2
+0.1
-0.1
-0.5
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.0
-0.4
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.2
-0.3
+0.0
N.D.
growth on ypd
YPD
-0.1
-0.1
+0.1
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.3
-0.5
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
+0.2
+0.4
+0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.0
-0.1
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
+0.1
+0.6
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
-0.1
+1.0
N.D.
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