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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11907 and 11908 are separated by 384 nucleotides
11908 and 11909 are separated by 185 nucleotides
11909 and 11910 are separated by 256 nucleotides
11910 and 11911 are separated by 209 nucleotides
mRNA_3539: 11907 - K12663 ECH1 Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, at 4,641 to 6,092
11907
mRNA_3540: 11908 - K00784 rnz ribonuclease Z, at 6,477 to 8,169
11908
mRNA_3541: 11909 - K01754 E4.3.1.19, ilvA, tdcB threonine dehydratase, at 8,355 to 10,759
11909
mRNA_3542: 11910 - K01597 MVD, mvaD diphosphomevalonate decarboxylase, at 11,016 to 12,700
11910
mRNA_3543: 11911 - HMMPfam-MAGE family-PF01454, at 12,910 to 14,656
11911
Group
Condition
mRNA
_3539
mRNA
_3540
mRNA
_3541
mRNA
_3542
mRNA
_3543
11907
11908
11909
11910
11911
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
-0.5
-2.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-1.2
-0.6
-0.6
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.1
-1.9
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.4
-0.2
-1.2
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
-1.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.5
-0.7
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.5
-0.6
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.0
-1.0
N.D.
N.D.
auxotrophy
Dropout Complete
-0.3
-0.3
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.5
-1.3
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.4
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose
-0.2
+0.1
-0.6
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
-0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.5
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.5
+0.1
N.D.
N.D.
growth on ypd
YPD
-0.1
+0.1
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.3
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.4
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.1
+0.6
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
+1.0
N.D.
N.D.
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