Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 11909 and 11910 are separated by 256 nucleotides11910 and 11911 are separated by 209 nucleotides11911 and 11912 are separated by 1141 nucleotides11912 and 11913 are separated by 194 nucleotides mRNA_3541: 11909 - K01754 E4.3.1.19, ilvA, tdcB threonine dehydratase, at 8,355 to 10,759 11909 mRNA_3542: 11910 - K01597 MVD, mvaD diphosphomevalonate decarboxylase, at 11,016 to 12,700 11910 mRNA_3543: 11911 - HMMPfam-MAGE family-PF01454, at 12,910 to 14,656 11911 mRNA_3544: 11912 - K03506 POLE4 DNA polymerase epsilon subunit 4, at 15,798 to 16,734 11912 mRNA_3545: 11913 - HMMPfam-SAP domain-PF02037,ProSiteProfiles-SAP motif profile.-PS50800,SMART-Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation-SM00513,SUPERFAMILY--SSF68906, at 16,929 to 18,162 11913
Group Condition mRNA_3541 mRNA_3542 mRNA_3543 mRNA_3544 mRNA_3545
11909 11910 11911 11912 11913
facs on lipid accumulation Sorted Low BODIPY Gate -1.9 N.D. N.D. -1.3 -0.2
facs on lipid accumulation Sorted High BODIPY Gate -2.1 N.D. N.D. -1.4 +0.1
facs on lipid accumulation Sorted No BODIPY Gate -1.4 N.D. N.D. -0.4 -0.1
growth on oleic acid YNB Glucose -1.2 N.D. N.D. -0.6 +0.3
growth on ricinoleic acid YNB Glucose -0.5 N.D. N.D. +0.1 -0.4
auxotrophy YNB Glucose 75mM Methionine -0.7 N.D. N.D. -0.1 +0.0
auxotrophy YNB Glucose 75mM Arginine -1.0 N.D. N.D. +0.4 +0.1
auxotrophy YNB Glucose -0.6 N.D. N.D. +0.1 -0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy -1.3 N.D. N.D. +0.8 -0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.0 N.D. N.D. -0.2 -0.3
growth on ypd YPD -0.1 N.D. N.D. +0.3 -0.6
ypd buoyancy 40 hrs Low Buoyancy +0.2 N.D. N.D. -0.2 -0.2
growth on ricinoleic acid YNB Methylricinoleic Acid -0.6 N.D. N.D. +0.7 -0.3
ypd buoyancy 40 hrs No Buoyancy Separation +0.1 N.D. N.D. -0.2 +0.1
auxotrophy Dropout Complete -0.2 N.D. N.D. +0.1 +0.2
growth on ricinoleic acid YNB Ricinoleic Acid -0.3 N.D. N.D. +0.9 -0.4
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.2 N.D. N.D. +0.3 -0.3
growth on oleic acid YNB Oleic Acid -0.6 N.D. N.D. +0.7 +0.4
ypd buoyancy 40 hrs High Buoyancy +0.6 N.D. N.D. +0.0 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.0 N.D. N.D. +0.9 -0.0
ypd buoyancy 40 hrs Median Buoyancy +1.0 N.D. N.D. -0.2 +0.2
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