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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11909 and 11910 are separated by 256 nucleotides
11910 and 11911 are separated by 209 nucleotides
11911 and 11912 are separated by 1141 nucleotides
11912 and 11913 are separated by 194 nucleotides
mRNA_3541: 11909 - K01754 E4.3.1.19, ilvA, tdcB threonine dehydratase, at 8,355 to 10,759
11909
mRNA_3542: 11910 - K01597 MVD, mvaD diphosphomevalonate decarboxylase, at 11,016 to 12,700
11910
mRNA_3543: 11911 - HMMPfam-MAGE family-PF01454, at 12,910 to 14,656
11911
mRNA_3544: 11912 - K03506 POLE4 DNA polymerase epsilon subunit 4, at 15,798 to 16,734
11912
mRNA_3545: 11913 - HMMPfam-SAP domain-PF02037,ProSiteProfiles-SAP motif profile.-PS50800,SMART-Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation-SM00513,SUPERFAMILY--SSF68906, at 16,929 to 18,162
11913
Group
Condition
mRNA
_3541
mRNA
_3542
mRNA
_3543
mRNA
_3544
mRNA
_3545
11909
11910
11911
11912
11913
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.9
N.D.
N.D.
-1.3
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-2.1
N.D.
N.D.
-1.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-1.4
N.D.
N.D.
-0.4
-0.1
growth on oleic acid
YNB Glucose
-1.2
N.D.
N.D.
-0.6
+0.3
growth on ricinoleic acid
YNB Glucose
-0.5
N.D.
N.D.
+0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.7
N.D.
N.D.
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-1.0
N.D.
N.D.
+0.4
+0.1
auxotrophy
YNB Glucose
-0.6
N.D.
N.D.
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.3
N.D.
N.D.
+0.8
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
N.D.
N.D.
-0.2
-0.3
growth on ypd
YPD
-0.1
N.D.
N.D.
+0.3
-0.6
ypd buoyancy
40 hrs Low Buoyancy
+0.2
N.D.
N.D.
-0.2
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
N.D.
N.D.
+0.7
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
N.D.
-0.2
+0.1
auxotrophy
Dropout Complete
-0.2
N.D.
N.D.
+0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
N.D.
N.D.
+0.9
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
N.D.
+0.3
-0.3
growth on oleic acid
YNB Oleic Acid
-0.6
N.D.
N.D.
+0.7
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.6
N.D.
N.D.
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
N.D.
+0.9
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+1.0
N.D.
N.D.
-0.2
+0.2
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