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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11913 and 11914 are separated by 570 nucleotides
11914 and 11915 are separated by 477 nucleotides
11915 and 11916 are separated by 244 nucleotides
11916 and 11917 are separated by 523 nucleotides
mRNA_3545: 11913 - HMMPfam-SAP domain-PF02037,ProSiteProfiles-SAP motif profile.-PS50800,SMART-Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation-SM00513,SUPERFAMILY--SSF68906, at 16,929 to 18,162
11913
mRNA_3546: 11914 - HMMPfam-Domain of unknown function (DUF3844)-PF12955, at 18,733 to 20,553
11914
mRNA_3547: 11915 - K02973 RP-S23e, RPS23 small subunit ribosomal protein S23e, at 21,031 to 22,475
11915
mRNA_3548: 11916 - K19307 BMT5 25S rRNA (uracil2634-N3)-methyltransferase, at 22,720 to 24,408
11916
mRNA_3549: 11917 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 24,932 to 26,343
11917
Group
Condition
mRNA
_3545
mRNA
_3546
mRNA
_3547
mRNA
_3548
mRNA
_3549
11913
11914
11915
11916
11917
growth on ypd
YPD
-0.6
-0.3
N.D.
+0.3
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.4
N.D.
+0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.1
N.D.
-0.4
+0.2
auxotrophy
YNB Glucose
-0.0
+0.1
N.D.
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.1
N.D.
-0.3
+0.6
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.4
N.D.
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.2
N.D.
-0.2
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.2
N.D.
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.0
N.D.
+0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
N.D.
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.2
N.D.
+0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.0
N.D.
+0.1
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.2
N.D.
+0.0
+0.6
auxotrophy
Dropout Complete
+0.2
+0.1
N.D.
+0.2
-0.0
growth on ricinoleic acid
YNB Glucose
-0.4
+0.1
N.D.
+0.1
+0.8
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
N.D.
+0.4
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.3
N.D.
+0.6
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
+0.2
N.D.
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.2
N.D.
+0.2
+0.4
growth on oleic acid
YNB Glucose
+0.3
-0.3
N.D.
+0.5
+0.6
growth on oleic acid
YNB Oleic Acid
+0.4
+0.1
N.D.
+0.3
+0.4
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