Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 11913 and 11914 are separated by 570 nucleotides11914 and 11915 are separated by 477 nucleotides11915 and 11916 are separated by 244 nucleotides11916 and 11917 are separated by 523 nucleotides mRNA_3545: 11913 - HMMPfam-SAP domain-PF02037,ProSiteProfiles-SAP motif profile.-PS50800,SMART-Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation-SM00513,SUPERFAMILY--SSF68906, at 16,929 to 18,162 11913 mRNA_3546: 11914 - HMMPfam-Domain of unknown function (DUF3844)-PF12955, at 18,733 to 20,553 11914 mRNA_3547: 11915 - K02973 RP-S23e, RPS23 small subunit ribosomal protein S23e, at 21,031 to 22,475 11915 mRNA_3548: 11916 - K19307 BMT5 25S rRNA (uracil2634-N3)-methyltransferase, at 22,720 to 24,408 11916 mRNA_3549: 11917 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 24,932 to 26,343 11917
Group Condition mRNA_3545 mRNA_3546 mRNA_3547 mRNA_3548 mRNA_3549
11913 11914 11915 11916 11917
growth on ypd YPD -0.6 -0.3 N.D. +0.3 -0.4
ypd buoyancy 40 hrs Low Buoyancy -0.2 -0.4 N.D. +0.3 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate -0.2 +0.1 N.D. -0.4 +0.2
auxotrophy YNB Glucose -0.0 +0.1 N.D. -0.3 +0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.3 -0.1 N.D. -0.3 +0.6
ypd buoyancy 40 hrs High Buoyancy +0.1 -0.4 N.D. +0.2 -0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.3 +0.2 N.D. -0.2 +0.3
auxotrophy YNB Glucose 75mM Methionine +0.0 +0.2 N.D. -0.0 -0.1
auxotrophy YNB Glucose 75mM Arginine +0.1 -0.0 N.D. +0.0 +0.1
ypd buoyancy 40 hrs Median Buoyancy +0.2 -0.1 N.D. +0.2 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.0 +0.2 N.D. +0.1 +0.0
growth on ricinoleic acid YNB Methylricinoleic Acid -0.3 +0.0 N.D. +0.1 +0.6
growth on ricinoleic acid YNB Ricinoleic Acid -0.4 +0.2 N.D. +0.0 +0.6
auxotrophy Dropout Complete +0.2 +0.1 N.D. +0.2 -0.0
growth on ricinoleic acid YNB Glucose -0.4 +0.1 N.D. +0.1 +0.8
facs on lipid accumulation Sorted No BODIPY Gate -0.1 +0.2 N.D. +0.4 +0.2
ypd buoyancy 40 hrs No Buoyancy Separation +0.1 -0.3 N.D. +0.6 +0.4
facs on lipid accumulation Sorted High BODIPY Gate +0.1 +0.2 N.D. +0.1 +0.4
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.0 +0.2 N.D. +0.2 +0.4
growth on oleic acid YNB Glucose +0.3 -0.3 N.D. +0.5 +0.6
growth on oleic acid YNB Oleic Acid +0.4 +0.1 N.D. +0.3 +0.4
remove
mRNA_3545
plot
remove
mRNA_3546
plot
remove
mRNA_3547
remove
mRNA_3548
plot
remove
mRNA_3549
plot