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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11914 and 11915 are separated by 477 nucleotides
11915 and 11916 are separated by 244 nucleotides
11916 and 11917 are separated by 523 nucleotides
11917 and 11918 are separated by 446 nucleotides
mRNA_3546: 11914 - HMMPfam-Domain of unknown function (DUF3844)-PF12955, at 18,733 to 20,553
11914
mRNA_3547: 11915 - K02973 RP-S23e, RPS23 small subunit ribosomal protein S23e, at 21,031 to 22,475
11915
mRNA_3548: 11916 - K19307 BMT5 25S rRNA (uracil2634-N3)-methyltransferase, at 22,720 to 24,408
11916
mRNA_3549: 11917 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 24,932 to 26,343
11917
mRNA_3550: 11918 - Hypothetical Protein, at 26,790 to 27,797
11918
Group
Condition
mRNA
_3546
mRNA
_3547
mRNA
_3548
mRNA
_3549
mRNA
_3550
11914
11915
11916
11917
11918
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
-0.4
+0.2
-0.7
growth on ypd
YPD
-0.3
N.D.
+0.3
-0.4
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.4
N.D.
+0.3
-0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.0
N.D.
+0.0
+0.1
-0.6
auxotrophy
YNB Glucose
+0.1
N.D.
-0.3
+0.0
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.4
N.D.
+0.2
-0.0
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
-0.0
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
-0.2
+0.3
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.2
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
+0.1
+0.0
-0.3
auxotrophy
Dropout Complete
+0.1
N.D.
+0.2
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
-0.3
+0.6
+0.1
growth on oleic acid
YNB Glucose
-0.3
N.D.
+0.5
+0.6
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
+0.2
+0.4
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
+0.4
+0.2
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
N.D.
+0.1
+0.4
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.3
+0.4
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
N.D.
+0.6
+0.4
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
+0.1
+0.6
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
+0.0
+0.6
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+0.1
+0.8
+0.4
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