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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11920 and 11921 are separated by 573 nucleotides
11921 and 11922 are separated by 134 nucleotides
11922 and 11923 are separated by 570 nucleotides
11923 and 11924 are separated by 131 nucleotides
mRNA_3552: 11920 - K10884 XRCC6, KU70, G22P1 ATP-dependent DNA helicase 2 subunit 1, at 30,770 to 33,816
11920
mRNA_3553: 11921 - Hypothetical Protein, at 34,390 to 35,973
11921
mRNA_3554: 11922 - KOG0254 Predicted transporter (major facilitator superfamily), at 36,108 to 36,965
11922
mRNA_3555: 11923 - Hypothetical Protein, at 37,536 to 38,312
11923
mRNA_3556: 11924 - KOG0254 Predicted transporter (major facilitator superfamily), at 38,444 to 40,817
11924
Group
Condition
mRNA
_3552
mRNA
_3553
mRNA
_3554
mRNA
_3555
mRNA
_3556
11920
11921
11922
11923
11924
growth on ypd
YPD
-0.3
-0.7
-0.3
-0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.1
-0.4
-0.1
-0.7
growth on oleic acid
YNB Glucose
-0.0
-0.8
+0.3
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
+0.0
+0.1
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.2
+0.2
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.1
+0.3
+0.1
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.1
+0.3
+0.2
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
-0.1
-0.2
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.2
-0.5
+0.0
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.5
-0.3
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.3
-0.2
+0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.3
-0.1
+0.0
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.0
+0.1
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.6
-0.5
+0.0
+0.2
auxotrophy
YNB Glucose
-0.1
+0.4
+0.1
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.3
+0.2
+0.1
-0.0
auxotrophy
Dropout Complete
-0.0
+0.1
+0.6
+0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.0
+0.3
+0.1
+0.5
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
+0.3
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.4
+0.0
+0.0
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.1
+0.2
+0.0
+2.1
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