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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11922 and 11923 are separated by 570 nucleotides
11923 and 11924 are separated by 131 nucleotides
11924 and 11925 are separated by 628 nucleotides
11925 and 11926 are separated by 163 nucleotides
mRNA_3554: 11922 - KOG0254 Predicted transporter (major facilitator superfamily), at 36,108 to 36,965
11922
mRNA_3555: 11923 - Hypothetical Protein, at 37,536 to 38,312
11923
mRNA_3556: 11924 - KOG0254 Predicted transporter (major facilitator superfamily), at 38,444 to 40,817
11924
mRNA_3557: 11925 - K01634 SGPL1, DPL1 sphinganine-1-phosphate aldolase, at 41,446 to 43,898
11925
mRNA_3558: 11926 - K14808 DDX54, DBP10 ATP-dependent RNA helicase DDX54/DBP10, at 44,062 to 47,314
11926
Group
Condition
mRNA
_3554
mRNA
_3555
mRNA
_3556
mRNA
_3557
mRNA
_3558
11922
11923
11924
11925
11926
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.2
-0.7
-0.1
-3.4
growth on ricinoleic acid
YNB Glucose
+0.3
+0.1
-0.1
-0.2
-3.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.3
+0.1
-0.7
+0.1
-2.1
growth on oleic acid
YNB Glucose
+0.3
-0.1
-0.2
-0.1
-1.8
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.1
-0.7
-0.6
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.1
+0.5
-0.2
-2.1
growth on oleic acid
YNB Oleic Acid
+0.0
+0.1
-0.5
+0.2
-1.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.1
-0.1
+0.2
-1.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.0
+2.1
-0.2
-3.2
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
-0.0
-0.1
-0.7
growth on ypd
YPD
-0.3
-0.1
-0.1
+0.2
-0.5
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.0
+0.0
-0.1
-0.8
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.0
+0.1
-0.2
-0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.1
-0.0
+0.4
-1.2
auxotrophy
Dropout Complete
+0.6
+0.1
-0.2
+0.3
-1.0
auxotrophy
YNB Glucose
+0.1
+0.1
+0.0
+0.2
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.2
+0.1
-0.2
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
+0.0
+0.2
+0.7
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.1
+0.3
+0.6
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
+0.0
+0.2
+0.6
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.0
+0.4
+0.6
-0.2
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