Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 11924 and 11925 are separated by 628 nucleotides11925 and 11926 are separated by 163 nucleotides11926 and 11927 are separated by 281 nucleotides11927 and 11928 are separated by 437 nucleotides mRNA_3556: 11924 - KOG0254 Predicted transporter (major facilitator superfamily), at 38,444 to 40,817 11924 mRNA_3557: 11925 - K01634 SGPL1, DPL1 sphinganine-1-phosphate aldolase, at 41,446 to 43,898 11925 mRNA_3558: 11926 - K14808 DDX54, DBP10 ATP-dependent RNA helicase DDX54/DBP10, at 44,062 to 47,314 11926 mRNA_3559: 11927 - K18622 ADD adducin, at 47,596 to 49,033 11927 mRNA_3560: 11928 - K06101 ASH1L histone-lysine N-methyltransferase ASH1L, at 49,471 to 51,932 11928
Group Condition mRNA_3556 mRNA_3557 mRNA_3558 mRNA_3559 mRNA_3560
11924 11925 11926 11927 11928
growth on ricinoleic acid YNB Glucose -0.1 -0.2 -3.6 -0.2 -0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.7 -0.1 -3.4 +0.2 -0.1
growth on ricinoleic acid YNB Methylricinoleic Acid -0.7 +0.1 -2.1 -1.2 -0.1
ypd buoyancy 40 hrs High Buoyancy +0.0 -0.1 -0.8 -0.9 -0.1
auxotrophy YNB Glucose 75mM Arginine -0.1 +0.2 -1.4 -0.2 +0.1
auxotrophy YNB Glucose 75mM Methionine -0.0 +0.4 -1.2 -0.6 +0.0
ypd buoyancy 40 hrs Low Buoyancy +0.1 -0.2 -0.5 -0.8 +0.1
ypd buoyancy 40 hrs Median Buoyancy -0.0 -0.1 -0.7 -0.4 +0.0
facs on lipid accumulation Sorted High BODIPY Gate -0.7 -0.6 +0.2 +0.0 -0.0
growth on oleic acid YNB Glucose -0.2 -0.1 -1.8 +0.9 +0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.5 -0.2 -2.1 +0.8 +0.4
facs on lipid accumulation Sorted Low BODIPY Gate +2.1 -0.2 -3.2 +0.7 +0.0
auxotrophy Dropout Complete -0.2 +0.3 -1.0 +0.5 -0.2
growth on oleic acid YNB Oleic Acid -0.5 +0.2 -1.1 +0.7 +0.2
ypd buoyancy 40 hrs No Buoyancy Separation +0.1 -0.2 +0.7 -0.7 +0.0
auxotrophy YNB Glucose +0.0 +0.2 -0.6 +0.1 +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.2 +0.7 -0.3 +0.6 -0.5
growth on ypd YPD -0.1 +0.2 -0.5 +2.3 -0.4
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.3 +0.6 -0.4 +0.9 +0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.2 +0.6 +0.3 +0.5 +0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.4 +0.6 -0.2 +0.8 +0.5
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