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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11924 and 11925 are separated by 628 nucleotides
11925 and 11926 are separated by 163 nucleotides
11926 and 11927 are separated by 281 nucleotides
11927 and 11928 are separated by 437 nucleotides
mRNA_3556: 11924 - KOG0254 Predicted transporter (major facilitator superfamily), at 38,444 to 40,817
11924
mRNA_3557: 11925 - K01634 SGPL1, DPL1 sphinganine-1-phosphate aldolase, at 41,446 to 43,898
11925
mRNA_3558: 11926 - K14808 DDX54, DBP10 ATP-dependent RNA helicase DDX54/DBP10, at 44,062 to 47,314
11926
mRNA_3559: 11927 - K18622 ADD adducin, at 47,596 to 49,033
11927
mRNA_3560: 11928 - K06101 ASH1L histone-lysine N-methyltransferase ASH1L, at 49,471 to 51,932
11928
Group
Condition
mRNA
_3556
mRNA
_3557
mRNA
_3558
mRNA
_3559
mRNA
_3560
11924
11925
11926
11927
11928
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
-3.6
-0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
-0.1
-3.4
+0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
+0.1
-2.1
-1.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
-0.8
-0.9
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.2
-1.4
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.4
-1.2
-0.6
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
-0.5
-0.8
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
-0.7
-0.4
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
-0.6
+0.2
+0.0
-0.0
growth on oleic acid
YNB Glucose
-0.2
-0.1
-1.8
+0.9
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.2
-2.1
+0.8
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+2.1
-0.2
-3.2
+0.7
+0.0
auxotrophy
Dropout Complete
-0.2
+0.3
-1.0
+0.5
-0.2
growth on oleic acid
YNB Oleic Acid
-0.5
+0.2
-1.1
+0.7
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.2
+0.7
-0.7
+0.0
auxotrophy
YNB Glucose
+0.0
+0.2
-0.6
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.7
-0.3
+0.6
-0.5
growth on ypd
YPD
-0.1
+0.2
-0.5
+2.3
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.6
-0.4
+0.9
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.6
+0.3
+0.5
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.6
-0.2
+0.8
+0.5
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