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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11926 and 11927 are separated by 281 nucleotides
11927 and 11928 are separated by 437 nucleotides
11928 and 11929 are separated by 1520 nucleotides
11929 and 11930 are separated by 3825 nucleotides
mRNA_3558: 11926 - K14808 DDX54, DBP10 ATP-dependent RNA helicase DDX54/DBP10, at 44,062 to 47,314
11926
mRNA_3559: 11927 - K18622 ADD adducin, at 47,596 to 49,033
11927
mRNA_3560: 11928 - K06101 ASH1L histone-lysine N-methyltransferase ASH1L, at 49,471 to 51,932
11928
mRNA_3561: 11929 - K06174 ABCE1, Rli1 ATP-binding cassette, sub-family E, member 1, at 53,453 to 55,273
11929
mRNA_3562: 11930 - KOG0017 FOG Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations, at 59,099 to 59,542
11930
Group
Condition
mRNA
_3558
mRNA
_3559
mRNA
_3560
mRNA
_3561
mRNA
_3562
11926
11927
11928
11929
11930
growth on ricinoleic acid
YNB Glucose
-3.6
-0.2
-0.1
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.1
-1.2
-0.1
N.D.
-0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
-3.4
+0.2
-0.1
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-3.2
+0.7
+0.0
N.D.
+0.6
auxotrophy
YNB Glucose 75mM Methionine
-1.2
-0.6
+0.0
N.D.
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.8
-0.9
-0.1
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-1.4
-0.2
+0.1
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.5
-0.8
+0.1
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.7
-0.4
+0.0
N.D.
+0.2
growth on oleic acid
YNB Glucose
-1.8
+0.9
+0.1
N.D.
+0.1
auxotrophy
YNB Glucose
-0.6
+0.1
+0.1
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-2.1
+0.8
+0.4
N.D.
+0.6
growth on oleic acid
YNB Oleic Acid
-1.1
+0.7
+0.2
N.D.
+0.1
auxotrophy
Dropout Complete
-1.0
+0.5
-0.2
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.9
+0.0
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.6
-0.5
N.D.
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.0
-0.0
N.D.
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.5
+0.2
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.8
+0.5
N.D.
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
-0.7
+0.0
N.D.
+1.4
growth on ypd
YPD
-0.5
+2.3
-0.4
N.D.
+0.3
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