Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 11926 and 11927 are separated by 281 nucleotides11927 and 11928 are separated by 437 nucleotides11928 and 11929 are separated by 1520 nucleotides11929 and 11930 are separated by 3825 nucleotides mRNA_3558: 11926 - K14808 DDX54, DBP10 ATP-dependent RNA helicase DDX54/DBP10, at 44,062 to 47,314 11926 mRNA_3559: 11927 - K18622 ADD adducin, at 47,596 to 49,033 11927 mRNA_3560: 11928 - K06101 ASH1L histone-lysine N-methyltransferase ASH1L, at 49,471 to 51,932 11928 mRNA_3561: 11929 - K06174 ABCE1, Rli1 ATP-binding cassette, sub-family E, member 1, at 53,453 to 55,273 11929 mRNA_3562: 11930 - KOG0017 FOG Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations, at 59,099 to 59,542 11930
Group Condition mRNA_3558 mRNA_3559 mRNA_3560 mRNA_3561 mRNA_3562
11926 11927 11928 11929 11930
growth on ricinoleic acid YNB Glucose -3.6 -0.2 -0.1 N.D. -0.3
growth on ricinoleic acid YNB Methylricinoleic Acid -2.1 -1.2 -0.1 N.D. -0.6
growth on ricinoleic acid YNB Ricinoleic Acid -3.4 +0.2 -0.1 N.D. -0.2
facs on lipid accumulation Sorted Low BODIPY Gate -3.2 +0.7 +0.0 N.D. +0.6
auxotrophy YNB Glucose 75mM Methionine -1.2 -0.6 +0.0 N.D. +0.0
ypd buoyancy 40 hrs High Buoyancy -0.8 -0.9 -0.1 N.D. +0.2
auxotrophy YNB Glucose 75mM Arginine -1.4 -0.2 +0.1 N.D. +0.1
ypd buoyancy 40 hrs Low Buoyancy -0.5 -0.8 +0.1 N.D. +0.2
ypd buoyancy 40 hrs Median Buoyancy -0.7 -0.4 +0.0 N.D. +0.2
growth on oleic acid YNB Glucose -1.8 +0.9 +0.1 N.D. +0.1
auxotrophy YNB Glucose -0.6 +0.1 +0.1 N.D. -0.0
facs on lipid accumulation Sorted No BODIPY Gate -2.1 +0.8 +0.4 N.D. +0.6
growth on oleic acid YNB Oleic Acid -1.1 +0.7 +0.2 N.D. +0.1
auxotrophy Dropout Complete -1.0 +0.5 -0.2 N.D. +0.6
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.4 +0.9 +0.0 N.D. -0.5
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.3 +0.6 -0.5 N.D. +0.3
facs on lipid accumulation Sorted High BODIPY Gate +0.2 +0.0 -0.0 N.D. +0.7
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.3 +0.5 +0.2 N.D. +0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.2 +0.8 +0.5 N.D. +0.3
ypd buoyancy 40 hrs No Buoyancy Separation +0.7 -0.7 +0.0 N.D. +1.4
growth on ypd YPD -0.5 +2.3 -0.4 N.D. +0.3
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