Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 11928 and 11929 are separated by 1520 nucleotides11929 and 11930 are separated by 3825 nucleotides11930 and 11931 are separated by 2408 nucleotides11931 and 11932 are separated by 616 nucleotides mRNA_3560: 11928 - K06101 ASH1L histone-lysine N-methyltransferase ASH1L, at 49,471 to 51,932 11928 mRNA_3561: 11929 - K06174 ABCE1, Rli1 ATP-binding cassette, sub-family E, member 1, at 53,453 to 55,273 11929 mRNA_3562: 11930 - KOG0017 FOG Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations, at 59,099 to 59,542 11930 mRNA_3563: 11931 - Hypothetical Protein, at 61,951 to 62,967 11931 mRNA_3564: 11932 - Hypothetical Protein, at 63,584 to 64,390 11932
Group Condition mRNA_3560 mRNA_3561 mRNA_3562 mRNA_3563 mRNA_3564
11928 11929 11930 11931 11932
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 N.D. -0.6 +0.0 +0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 N.D. -0.2 -0.3 +0.1
growth on ypd YPD -0.4 N.D. +0.3 -0.2 -0.1
growth on ricinoleic acid YNB Glucose -0.1 N.D. -0.3 -0.0 +0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.0 N.D. -0.5 +0.1 +0.1
auxotrophy YNB Glucose 75mM Methionine +0.0 N.D. +0.0 -0.0 +0.1
growth on oleic acid YNB Glucose +0.1 N.D. +0.1 -0.1 +0.0
auxotrophy YNB Glucose +0.1 N.D. -0.0 +0.2 -0.0
growth on oleic acid YNB Oleic Acid +0.2 N.D. +0.1 -0.1 +0.1
ypd buoyancy 40 hrs Median Buoyancy +0.0 N.D. +0.2 +0.1 +0.0
ypd buoyancy 40 hrs Low Buoyancy +0.1 N.D. +0.2 +0.1 +0.0
auxotrophy YNB Glucose 75mM Arginine +0.1 N.D. +0.1 +0.2 +0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.5 N.D. +0.3 +0.3 +0.2
ypd buoyancy 40 hrs High Buoyancy -0.1 N.D. +0.2 +0.2 +0.2
facs on lipid accumulation Sorted High BODIPY Gate -0.0 N.D. +0.7 -0.2 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.2 N.D. +0.0 +0.1 +0.4
facs on lipid accumulation Sorted Low BODIPY Gate +0.0 N.D. +0.6 -0.2 +0.3
auxotrophy Dropout Complete -0.2 N.D. +0.6 +0.3 +0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.4 N.D. +0.6 -0.3 +0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.5 N.D. +0.3 +0.0 +0.2
ypd buoyancy 40 hrs No Buoyancy Separation +0.0 N.D. +1.4 +0.4 +0.1
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