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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11928 and 11929 are separated by 1520 nucleotides
11929 and 11930 are separated by 3825 nucleotides
11930 and 11931 are separated by 2408 nucleotides
11931 and 11932 are separated by 616 nucleotides
mRNA_3560: 11928 - K06101 ASH1L histone-lysine N-methyltransferase ASH1L, at 49,471 to 51,932
11928
mRNA_3561: 11929 - K06174 ABCE1, Rli1 ATP-binding cassette, sub-family E, member 1, at 53,453 to 55,273
11929
mRNA_3562: 11930 - KOG0017 FOG Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations, at 59,099 to 59,542
11930
mRNA_3563: 11931 - Hypothetical Protein, at 61,951 to 62,967
11931
mRNA_3564: 11932 - Hypothetical Protein, at 63,584 to 64,390
11932
Group
Condition
mRNA
_3560
mRNA
_3561
mRNA
_3562
mRNA
_3563
mRNA
_3564
11928
11929
11930
11931
11932
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
-0.6
+0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
-0.2
-0.3
+0.1
growth on ypd
YPD
-0.4
N.D.
+0.3
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
-0.3
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
N.D.
-0.5
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
N.D.
+0.0
-0.0
+0.1
growth on oleic acid
YNB Glucose
+0.1
N.D.
+0.1
-0.1
+0.0
auxotrophy
YNB Glucose
+0.1
N.D.
-0.0
+0.2
-0.0
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
+0.1
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
+0.2
+0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
+0.2
+0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
+0.1
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
N.D.
+0.3
+0.3
+0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
+0.2
+0.2
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
N.D.
+0.7
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
+0.0
+0.1
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
N.D.
+0.6
-0.2
+0.3
auxotrophy
Dropout Complete
-0.2
N.D.
+0.6
+0.3
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
N.D.
+0.6
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
N.D.
+0.3
+0.0
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
N.D.
+1.4
+0.4
+0.1
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