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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11929 and 11930 are separated by 3825 nucleotides
11930 and 11931 are separated by 2408 nucleotides
11931 and 11932 are separated by 616 nucleotides
11932 and 11933 are separated by 427 nucleotides
mRNA_3561: 11929 - K06174 ABCE1, Rli1 ATP-binding cassette, sub-family E, member 1, at 53,453 to 55,273
11929
mRNA_3562: 11930 - KOG0017 FOG Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations, at 59,099 to 59,542
11930
mRNA_3563: 11931 - Hypothetical Protein, at 61,951 to 62,967
11931
mRNA_3564: 11932 - Hypothetical Protein, at 63,584 to 64,390
11932
mRNA_3565: 11933 - KOG0254 Predicted transporter (major facilitator superfamily), at 64,818 to 67,834
11933
Group
Condition
mRNA
_3561
mRNA
_3562
mRNA
_3563
mRNA
_3564
mRNA
_3565
11929
11930
11931
11932
11933
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.5
+0.1
+0.1
-1.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.3
+0.0
+0.2
-1.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.6
+0.0
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
+0.1
+0.4
-1.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
-0.3
+0.1
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
-0.1
+0.1
-0.5
growth on oleic acid
YNB Glucose
N.D.
+0.1
-0.1
+0.0
-0.4
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
-0.0
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.0
-0.0
+0.1
-0.3
growth on ypd
YPD
N.D.
+0.3
-0.2
-0.1
+0.2
auxotrophy
YNB Glucose
N.D.
-0.0
+0.2
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
+0.3
+0.2
-0.7
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
+0.2
+0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.7
-0.2
+0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
+0.1
+0.0
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.6
-0.3
+0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.1
+0.0
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
+0.2
+0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.6
-0.2
+0.3
+0.0
auxotrophy
Dropout Complete
N.D.
+0.6
+0.3
+0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+1.4
+0.4
+0.1
+0.2
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