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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11930 and 11931 are separated by 2408 nucleotides
11931 and 11932 are separated by 616 nucleotides
11932 and 11933 are separated by 427 nucleotides
11933 and 11934 are separated by 490 nucleotides
mRNA_3562: 11930 - KOG0017 FOG Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations, at 59,099 to 59,542
11930
mRNA_3563: 11931 - Hypothetical Protein, at 61,951 to 62,967
11931
mRNA_3564: 11932 - Hypothetical Protein, at 63,584 to 64,390
11932
mRNA_3565: 11933 - KOG0254 Predicted transporter (major facilitator superfamily), at 64,818 to 67,834
11933
mRNA_3566: 11934 - HMMPfam-Opioid growth factor receptor (OGFr) conserved region-PF04664, at 68,325 to 69,478
11934
Group
Condition
mRNA
_3562
mRNA
_3563
mRNA
_3564
mRNA
_3565
mRNA
_3566
11930
11931
11932
11933
11934
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.1
+0.1
-1.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.0
+0.2
-1.7
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
+0.0
+0.1
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.1
+0.4
-1.2
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.3
+0.1
-0.0
+0.1
growth on ypd
YPD
+0.3
-0.2
-0.1
+0.2
-0.3
growth on oleic acid
YNB Glucose
+0.1
-0.1
+0.0
-0.4
+0.1
growth on ricinoleic acid
YNB Glucose
-0.3
-0.0
+0.0
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
+0.1
-0.5
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.0
+0.1
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.2
+0.0
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
+0.0
+0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.1
+0.0
-0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
-0.2
+0.1
-0.3
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.6
-0.3
+0.2
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.3
+0.2
-0.7
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
+0.2
-0.0
-0.1
auxotrophy
YNB Glucose
-0.0
+0.2
-0.0
-0.0
+0.4
auxotrophy
Dropout Complete
+0.6
+0.3
+0.1
-0.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
-0.2
+0.3
+0.0
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+1.4
+0.4
+0.1
+0.2
-0.4
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