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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11932 and 11933 are separated by 427 nucleotides
11933 and 11934 are separated by 490 nucleotides
11934 and 11935 are separated by 567 nucleotides
11935 and 11936 are separated by 180 nucleotides
mRNA_3564: 11932 - Hypothetical Protein, at 63,584 to 64,390
11932
mRNA_3565: 11933 - KOG0254 Predicted transporter (major facilitator superfamily), at 64,818 to 67,834
11933
mRNA_3566: 11934 - HMMPfam-Opioid growth factor receptor (OGFr) conserved region-PF04664, at 68,325 to 69,478
11934
mRNA_3567: 11935 - KOG1760 Molecular chaperone Prefoldin, subunit 4, at 70,046 to 70,788
11935
mRNA_3568: 11936 - KOG4055 Uncharacterized conserved protein, at 70,969 to 72,030
11936
Group
Condition
mRNA
_3564
mRNA
_3565
mRNA
_3566
mRNA
_3567
mRNA
_3568
11932
11933
11934
11935
11936
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-1.7
+0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-1.3
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-1.2
+0.2
N.D.
N.D.
growth on ypd
YPD
-0.1
+0.2
-0.3
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.0
-0.4
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.1
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.7
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.2
-0.4
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.2
-0.4
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.0
-0.1
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.5
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.3
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.3
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.0
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.2
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.2
+0.1
N.D.
N.D.
auxotrophy
Dropout Complete
+0.1
-0.1
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-0.0
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
+0.1
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose
-0.0
-0.0
+0.4
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.0
+0.3
N.D.
N.D.
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