Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 11938 and 11939 are separated by 687 nucleotides11939 and 11940 are separated by 479 nucleotides11940 and 11941 overlap by 4 nucleotides11941 and 11942 are separated by 558 nucleotides mRNA_3570: 11938 - HMMPfam-Eukaryotic aspartyl protease-PF00026,PRINTS-Pepsin (A1) aspartic protease family signature-PR00792,ProSitePatterns-Eukaryotic and viral aspartyl proteases active site.-PS00141,SUPERFAMILY--SSF50630, at 75,276 to 76,903 11938 mRNA_3571: 11939 - K03681 RRP40, EXOSC3 exosome complex component RRP40, at 77,591 to 78,625 11939 mRNA_3572: 11940 - K11314 TADA2A, ADA2 transcriptional adapter 2-alpha, at 79,105 to 81,061 11940 mRNA_3573: 11941 - SUPERFAMILY--SSF54928, at 81,058 to 83,632 11941 mRNA_3574: 11942 - ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 84,191 to 85,564 11942
Group Condition mRNA_3570 mRNA_3571 mRNA_3572 mRNA_3573 mRNA_3574
11938 11939 11940 11941 11942
growth on ricinoleic acid YNB Methylricinoleic Acid -0.6 N.D. N.D. -0.3 -0.3
growth on ricinoleic acid YNB Ricinoleic Acid -0.8 N.D. N.D. -0.1 -0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.5 N.D. N.D. +0.0 -0.1
growth on ricinoleic acid YNB Glucose +0.1 N.D. N.D. -0.3 -0.4
growth on oleic acid YNB Glucose -0.5 N.D. N.D. -0.1 +0.1
auxotrophy Dropout Complete -0.1 N.D. N.D. +0.1 -0.4
facs on lipid accumulation Sorted Low BODIPY Gate -0.7 N.D. N.D. -0.2 +0.6
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 N.D. N.D. +0.0 -0.4
growth on oleic acid YNB Oleic Acid -0.2 N.D. N.D. -0.0 -0.0
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.4 N.D. N.D. +0.2 +0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.1 N.D. N.D. +0.0 -0.2
ypd buoyancy 40 hrs Low Buoyancy -0.2 N.D. N.D. +0.1 +0.1
auxotrophy YNB Glucose 75mM Methionine -0.2 N.D. N.D. +0.2 -0.0
auxotrophy YNB Glucose +0.0 N.D. N.D. -0.1 +0.0
auxotrophy YNB Glucose 75mM Arginine -0.2 N.D. N.D. +0.2 +0.2
facs on lipid accumulation Sorted High BODIPY Gate -0.3 N.D. N.D. +0.3 +0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.1 N.D. N.D. -0.2 +0.3
ypd buoyancy 40 hrs Median Buoyancy +0.1 N.D. N.D. -0.1 +0.4
ypd buoyancy 40 hrs High Buoyancy +0.1 N.D. N.D. +0.2 +0.2
growth on ypd YPD +0.1 N.D. N.D. -0.0 +0.5
ypd buoyancy 40 hrs No Buoyancy Separation +0.0 N.D. N.D. +0.3 +0.3
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