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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11939 and 11940 are separated by 479 nucleotides
11940 and 11941 overlap by 4 nucleotides
11941 and 11942 are separated by 558 nucleotides
11942 and 11943 are separated by 670 nucleotides
mRNA_3571: 11939 - K03681 RRP40, EXOSC3 exosome complex component RRP40, at 77,591 to 78,625
11939
mRNA_3572: 11940 - K11314 TADA2A, ADA2 transcriptional adapter 2-alpha, at 79,105 to 81,061
11940
mRNA_3573: 11941 - SUPERFAMILY--SSF54928, at 81,058 to 83,632
11941
mRNA_3574: 11942 - ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 84,191 to 85,564
11942
mRNA_3575: 11943 - Hypothetical Protein, at 86,235 to 86,923
11943
Group
Condition
mRNA
_3571
mRNA
_3572
mRNA
_3573
mRNA
_3574
mRNA
_3575
11939
11940
11941
11942
11943
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.3
-0.3
-0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.1
+0.1
-0.7
auxotrophy
Dropout Complete
N.D.
N.D.
+0.1
-0.4
-0.4
auxotrophy
YNB Glucose
N.D.
N.D.
-0.1
+0.0
-0.5
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.0
-0.0
-0.4
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.3
-0.4
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.1
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.2
+0.2
-0.6
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.2
-0.0
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.2
+0.3
-0.1
growth on ypd
YPD
N.D.
N.D.
-0.0
+0.5
-0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
+0.4
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.3
+0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.0
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.0
-0.4
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.0
-0.1
+0.5
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.2
+0.2
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.3
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.2
+0.0
+0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.2
+0.6
+0.6
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