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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11941 and 11942 are separated by 558 nucleotides
11942 and 11943 are separated by 670 nucleotides
11943 and 11944 are separated by 468 nucleotides
11944 and 11945 are separated by 997 nucleotides
mRNA_3573: 11941 - SUPERFAMILY--SSF54928, at 81,058 to 83,632
11941
mRNA_3574: 11942 - ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 84,191 to 85,564
11942
mRNA_3575: 11943 - Hypothetical Protein, at 86,235 to 86,923
11943
mRNA_3576: 11944 - Hypothetical Protein, at 87,392 to 87,994
11944
mRNA_3577: 11945 - K04567 KARS, lysS lysyl-tRNA synthetase, class II, at 88,992 to 92,589
11945
Group
Condition
mRNA
_3573
mRNA
_3574
mRNA
_3575
mRNA
_3576
mRNA
_3577
11941
11942
11943
11944
11945
growth on oleic acid
YNB Glucose
-0.1
+0.1
-0.7
N.D.
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.3
-0.1
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
-0.0
-0.0
-0.4
N.D.
-0.4
auxotrophy
YNB Glucose
-0.1
+0.0
-0.5
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.3
-0.1
N.D.
-0.4
growth on ricinoleic acid
YNB Glucose
-0.3
-0.4
+0.2
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.2
-0.1
N.D.
+0.1
auxotrophy
Dropout Complete
+0.1
-0.4
-0.4
N.D.
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.3
+0.0
N.D.
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.1
-0.2
N.D.
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.4
-0.2
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.0
-0.3
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
-0.6
N.D.
+0.5
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
+0.2
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
+0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.1
+0.5
N.D.
+0.2
growth on ypd
YPD
-0.0
+0.5
-0.5
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.4
+0.7
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.0
+0.6
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.2
+0.5
N.D.
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.6
+0.6
N.D.
-0.0
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