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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11945 and 11946 are separated by 370 nucleotides
11946 and 11947 are separated by 150 nucleotides
11947 and 11948 are separated by 1147 nucleotides
11948 and 11949 are separated by 79 nucleotides
mRNA_3577: 11945 - K04567 KARS, lysS lysyl-tRNA synthetase, class II, at 88,992 to 92,589
11945
mRNA_3578: 11946 - HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316, at 92,960 to 93,719
11946
mRNA_3579: 11947 - K16570 TUBGCP3, GCP3 gamma-tubulin complex component 3, at 93,870 to 96,029
11947
mRNA_3580: 11948 - KOG0715 Molecular chaperone (DnaJ superfamily), at 97,177 to 97,844
11948
mRNA_3581: 11949 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 97,924 to 100,153
11949
Group
Condition
mRNA
_3577
mRNA
_3578
mRNA
_3579
mRNA
_3580
mRNA
_3581
11945
11946
11947
11948
11949
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
N.D.
N.D.
-2.4
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
N.D.
N.D.
-1.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
N.D.
-0.9
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
N.D.
-1.3
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
N.D.
N.D.
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
N.D.
N.D.
-0.5
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
N.D.
-0.2
+0.0
growth on oleic acid
YNB Oleic Acid
-0.4
N.D.
N.D.
-0.0
+0.1
growth on ypd
YPD
+0.6
N.D.
N.D.
-0.8
-0.2
growth on oleic acid
YNB Glucose
-0.5
N.D.
N.D.
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
N.D.
-0.3
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
N.D.
-0.2
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
N.D.
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
N.D.
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
N.D.
N.D.
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
N.D.
N.D.
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
N.D.
+0.6
+0.1
auxotrophy
Dropout Complete
+0.3
N.D.
N.D.
+0.6
+0.1
auxotrophy
YNB Glucose
-0.1
N.D.
N.D.
+1.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.5
N.D.
N.D.
+1.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
N.D.
+1.4
+0.1
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