Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
11946 and 11947 are separated by 150 nucleotides
11947 and 11948 are separated by 1147 nucleotides
11948 and 11949 are separated by 79 nucleotides
11949 and 11950 are separated by 293 nucleotides
mRNA_3578: 11946 - HMMPfam-Glutathione-dependent formaldehyde-activating enzyme-PF04828,SUPERFAMILY--SSF51316, at 92,960 to 93,719
11946
mRNA_3579: 11947 - K16570 TUBGCP3, GCP3 gamma-tubulin complex component 3, at 93,870 to 96,029
11947
mRNA_3580: 11948 - KOG0715 Molecular chaperone (DnaJ superfamily), at 97,177 to 97,844
11948
mRNA_3581: 11949 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 97,924 to 100,153
11949
mRNA_3582: 11950 - HMMPfam-Polycystin cation channel-PF08016, at 100,447 to 103,297
11950
Group
Condition
mRNA
_3578
mRNA
_3579
mRNA
_3580
mRNA
_3581
mRNA
_3582
11946
11947
11948
11949
11950
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-2.4
-0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-1.2
-0.0
-0.1
growth on ypd
YPD
N.D.
N.D.
-0.8
-0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-1.3
+0.3
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.9
-0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.5
-0.0
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.2
+0.0
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
+0.1
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.0
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.3
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.2
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
+0.2
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.1
-0.1
+0.6
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.2
-0.0
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.1
+0.1
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.6
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
+0.3
+0.3
auxotrophy
Dropout Complete
N.D.
N.D.
+0.6
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+1.0
-0.0
+0.2
auxotrophy
YNB Glucose
N.D.
N.D.
+1.3
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+1.4
+0.1
+0.2
remove
mRNA_3578
plot
remove
mRNA_3579
plot
remove
mRNA_3580
remove
mRNA_3581
plot
remove
mRNA_3582
plot