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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11948 and 11949 are separated by 79 nucleotides
11949 and 11950 are separated by 293 nucleotides
11950 and 11951 are separated by 788 nucleotides
11951 and 11952 are separated by 299 nucleotides
mRNA_3580: 11948 - KOG0715 Molecular chaperone (DnaJ superfamily), at 97,177 to 97,844
11948
mRNA_3581: 11949 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 97,924 to 100,153
11949
mRNA_3582: 11950 - HMMPfam-Polycystin cation channel-PF08016, at 100,447 to 103,297
11950
mRNA_3583: 11951 - Hypothetical Protein, at 104,086 to 104,307
11951
mRNA_3584: 11952 - K00122 FDH formate dehydrogenase, at 104,607 to 106,241
11952
Group
Condition
mRNA
_3580
mRNA
_3581
mRNA
_3582
mRNA
_3583
mRNA
_3584
11948
11949
11950
11951
11952
ypd buoyancy
40 hrs No Buoyancy Separation
-2.4
-0.0
+0.1
N.D.
-0.1
growth on ypd
YPD
-0.8
-0.2
-0.1
N.D.
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-1.2
-0.0
-0.1
N.D.
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
-0.1
+0.3
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.3
+0.3
+0.3
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.0
+0.0
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
-0.0
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.0
+0.3
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
-0.0
+0.1
+0.0
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.2
-0.1
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
+0.4
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.2
-0.0
N.D.
+0.2
growth on oleic acid
YNB Glucose
+0.2
-0.0
+0.2
N.D.
+0.3
auxotrophy
Dropout Complete
+0.6
+0.1
+0.1
N.D.
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.1
+0.6
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.3
+0.2
N.D.
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.1
-0.1
N.D.
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.3
+0.3
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+1.0
-0.0
+0.2
N.D.
+0.1
auxotrophy
YNB Glucose
+1.3
+0.1
+0.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+1.4
+0.1
+0.2
N.D.
+0.3
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