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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11951 and 11952 are separated by 299 nucleotides
11952 and 11953 are separated by 731 nucleotides
11953 and 11954 are separated by 1442 nucleotides
11954 and 11955 are separated by 181 nucleotides
mRNA_3583: 11951 - Hypothetical Protein, at 104,086 to 104,307
11951
mRNA_3584: 11952 - K00122 FDH formate dehydrogenase, at 104,607 to 106,241
11952
mRNA_3585: 11953 - KOG1339 Aspartyl protease, at 106,973 to 108,703
11953
mRNA_3586: 11954 - HMMPfam-Membrane fusion protein Use1-PF09753, at 110,146 to 111,411
11954
mRNA_3587: 11955 - K12836 U2AF1 splicing factor U2AF 35 kDa subunit, at 111,593 to 112,967
11955
Group
Condition
mRNA
_3583
mRNA
_3584
mRNA
_3585
mRNA
_3586
mRNA
_3587
11951
11952
11953
11954
11955
auxotrophy
Dropout Complete
N.D.
+0.1
-0.7
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.4
N.D.
N.D.
growth on ypd
YPD
N.D.
+0.3
-0.6
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose
N.D.
-0.1
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
+0.2
N.D.
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.3
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
+0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.3
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
+0.5
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.6
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.3
+0.5
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.5
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
+0.8
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
+1.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
+1.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.4
+0.8
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
+1.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.7
+1.2
N.D.
N.D.
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