Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
11952 and 11953 are separated by 731 nucleotides
11953 and 11954 are separated by 1442 nucleotides
11954 and 11955 are separated by 181 nucleotides
11955 and 11956 are separated by 244 nucleotides
mRNA_3584: 11952 - K00122 FDH formate dehydrogenase, at 104,607 to 106,241
11952
mRNA_3585: 11953 - KOG1339 Aspartyl protease, at 106,973 to 108,703
11953
mRNA_3586: 11954 - HMMPfam-Membrane fusion protein Use1-PF09753, at 110,146 to 111,411
11954
mRNA_3587: 11955 - K12836 U2AF1 splicing factor U2AF 35 kDa subunit, at 111,593 to 112,967
11955
mRNA_3588: 11956 - KOG0254 Predicted transporter (major facilitator superfamily), at 113,212 to 115,744
11956
Group
Condition
mRNA
_3584
mRNA
_3585
mRNA
_3586
mRNA
_3587
mRNA
_3588
11952
11953
11954
11955
11956
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.4
N.D.
N.D.
-0.2
auxotrophy
Dropout Complete
+0.1
-0.7
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.2
N.D.
N.D.
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
N.D.
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
+0.2
-0.3
N.D.
N.D.
+0.2
growth on ypd
YPD
+0.3
-0.6
N.D.
N.D.
+0.3
auxotrophy
YNB Glucose
-0.1
+0.2
N.D.
N.D.
+0.1
growth on oleic acid
YNB Glucose
+0.3
-0.2
N.D.
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.1
N.D.
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
N.D.
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.2
N.D.
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.5
N.D.
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.5
N.D.
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
+0.3
N.D.
N.D.
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
+0.2
N.D.
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.8
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+1.2
N.D.
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+1.0
N.D.
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.8
N.D.
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.7
+1.2
N.D.
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+1.3
N.D.
N.D.
+0.6
remove
mRNA_3584
plot
remove
mRNA_3585
plot
remove
mRNA_3586
remove
mRNA_3587
plot
remove
mRNA_3588
plot