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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11953 and 11954 are separated by 1442 nucleotides
11954 and 11955 are separated by 181 nucleotides
11955 and 11956 are separated by 244 nucleotides
11956 and 11957 are separated by 485 nucleotides
mRNA_3585: 11953 - KOG1339 Aspartyl protease, at 106,973 to 108,703
11953
mRNA_3586: 11954 - HMMPfam-Membrane fusion protein Use1-PF09753, at 110,146 to 111,411
11954
mRNA_3587: 11955 - K12836 U2AF1 splicing factor U2AF 35 kDa subunit, at 111,593 to 112,967
11955
mRNA_3588: 11956 - KOG0254 Predicted transporter (major facilitator superfamily), at 113,212 to 115,744
11956
mRNA_3589: 11957 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF101908,SUPERFAMILY--SSF81383, at 116,230 to 117,801
11957
Group
Condition
mRNA
_3585
mRNA
_3586
mRNA
_3587
mRNA
_3588
mRNA
_3589
11953
11954
11955
11956
11957
ypd buoyancy
40 hrs High Buoyancy
-0.4
N.D.
N.D.
-0.2
+0.1
growth on ypd
YPD
-0.6
N.D.
N.D.
+0.3
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
N.D.
N.D.
-0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
N.D.
+0.1
-0.2
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
N.D.
+0.3
-0.2
growth on oleic acid
YNB Glucose
-0.2
N.D.
N.D.
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.8
N.D.
N.D.
+0.1
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
N.D.
N.D.
+0.0
+0.0
auxotrophy
Dropout Complete
-0.7
N.D.
N.D.
+0.2
+0.9
auxotrophy
YNB Glucose
+0.2
N.D.
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
N.D.
N.D.
-0.1
+0.3
growth on oleic acid
YNB Oleic Acid
-0.3
N.D.
N.D.
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.2
N.D.
N.D.
+0.1
-0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.8
N.D.
N.D.
+0.3
-0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.5
N.D.
N.D.
+0.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.5
N.D.
N.D.
+0.1
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
N.D.
N.D.
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.2
N.D.
N.D.
+0.1
-0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.2
N.D.
N.D.
+0.1
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.0
N.D.
N.D.
+0.4
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.3
N.D.
N.D.
+0.6
-0.4
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