Fitness for 5 genes in Rhodosporidium toruloides IFO0880

Add gene:

Number of genes on each side:  

Top 21 experiments (either direction), sorted by average fitness

Or view all 21 experiments or choose conditions or try the comparative fitness browser

500 nt 11957 and 11958 are separated by 1033 nucleotides11958 and 11959 are separated by 272 nucleotides11959 and 11960 are separated by 406 nucleotides11960 and 11961 are separated by 144 nucleotides mRNA_3589: 11957 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF101908,SUPERFAMILY--SSF81383, at 116,230 to 117,801 11957 mRNA_3590: 11958 - K02136 ATPeF1G, ATP5C1, ATP3 F-type H+-transporting ATPase subunit gamma, at 118,835 to 120,315 11958 mRNA_3591: 11959 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 120,588 to 122,766 11959 mRNA_3592: 11960 - KOG2664 Small nuclear RNA activating protein complex - 50kD subunit (SNAP50), at 123,173 to 125,228 11960 mRNA_3593: 11961 - K06978 K06978 uncharacterized protein, at 125,373 to 127,423 11961
Group Condition mRNA_3589 mRNA_3590 mRNA_3591 mRNA_3592 mRNA_3593
11957 11958 11959 11960 11961
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.9 N.D. -0.1 N.D. -0.5
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.5 N.D. -0.3 N.D. -0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.5 N.D. -0.1 N.D. -0.4
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.6 N.D. +0.0 N.D. -0.4
growth on ricinoleic acid YNB Methylricinoleic Acid +0.1 N.D. -0.4 N.D. -0.5
growth on ricinoleic acid YNB Glucose -0.2 N.D. -0.5 N.D. -0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.2 N.D. -0.4 N.D. -0.2
auxotrophy YNB Glucose 75mM Arginine +0.2 N.D. -0.6 N.D. -0.3
auxotrophy YNB Glucose +0.2 N.D. -0.4 N.D. -0.1
growth on oleic acid YNB Glucose +0.3 N.D. -0.3 N.D. -0.3
growth on ypd YPD -0.2 N.D. -0.3 N.D. +0.2
ypd buoyancy 40 hrs Low Buoyancy +0.3 N.D. -0.1 N.D. -0.3
ypd buoyancy 40 hrs High Buoyancy +0.1 N.D. -0.1 N.D. -0.1
ypd buoyancy 40 hrs Median Buoyancy +0.1 N.D. -0.2 N.D. -0.0
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 N.D. -0.2 N.D. +0.3
growth on oleic acid YNB Oleic Acid +0.5 N.D. -0.3 N.D. -0.4
auxotrophy YNB Glucose 75mM Methionine +0.6 N.D. -0.4 N.D. -0.2
facs on lipid accumulation Sorted Low BODIPY Gate -0.4 N.D. +0.6 N.D. +0.0
auxotrophy Dropout Complete +0.9 N.D. -0.1 N.D. -0.5
facs on lipid accumulation Sorted High BODIPY Gate +0.3 N.D. +0.4 N.D. -0.4
facs on lipid accumulation Sorted No BODIPY Gate +0.0 N.D. +0.5 N.D. -0.1
remove
mRNA_3589
plot		 remove
mRNA_3590
plot		 remove
mRNA_3591		 remove
mRNA_3592
plot		 remove
mRNA_3593
plot