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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11960 and 11961 are separated by 144 nucleotides
11961 and 11962 are separated by 185 nucleotides
11962 and 11963 are separated by 398 nucleotides
11963 and 11964 are separated by 118 nucleotides
mRNA_3592: 11960 - KOG2664 Small nuclear RNA activating protein complex - 50kD subunit (SNAP50), at 123,173 to 125,228
11960
mRNA_3593: 11961 - K06978 K06978 uncharacterized protein, at 125,373 to 127,423
11961
mRNA_3594: 11962 - K01555 FAH, fahA fumarylacetoacetase, at 127,609 to 129,068
11962
mRNA_3595: 11963 - K09838 ZEP, ABA1 zeaxanthin epoxidase, at 129,467 to 131,137
11963
mRNA_3596: 11964 - HMMPfam-Phytanoyl-CoA dioxygenase (PhyH)-PF05721,SUPERFAMILY--SSF51197, at 131,256 to 132,687
11964
Group
Condition
mRNA
_3592
mRNA
_3593
mRNA
_3594
mRNA
_3595
mRNA
_3596
11960
11961
11962
11963
11964
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.4
-0.4
-0.5
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.5
-0.4
-0.9
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.4
-0.1
-0.7
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.4
+0.0
-0.6
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.2
+0.0
-0.8
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.5
-0.2
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.3
-0.3
-0.5
+0.4
auxotrophy
YNB Glucose
N.D.
-0.1
-0.1
-0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
-0.1
-0.0
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
-0.2
-0.1
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.0
-0.0
-0.8
+0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
-0.2
+0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
+0.2
-0.4
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.0
-0.2
+0.1
-0.1
auxotrophy
Dropout Complete
N.D.
-0.5
+0.1
+0.2
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.1
+0.1
-0.1
growth on ypd
YPD
N.D.
+0.2
-0.2
-0.0
+0.3
growth on oleic acid
YNB Glucose
N.D.
-0.3
-0.1
+0.5
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
-0.4
+0.1
+0.5
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
+0.1
+0.2
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.3
+0.8
+0.6
-0.4
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