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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11961 and 11962 are separated by 185 nucleotides
11962 and 11963 are separated by 398 nucleotides
11963 and 11964 are separated by 118 nucleotides
11964 and 11965 are separated by 179 nucleotides
mRNA_3593: 11961 - K06978 K06978 uncharacterized protein, at 125,373 to 127,423
11961
mRNA_3594: 11962 - K01555 FAH, fahA fumarylacetoacetase, at 127,609 to 129,068
11962
mRNA_3595: 11963 - K09838 ZEP, ABA1 zeaxanthin epoxidase, at 129,467 to 131,137
11963
mRNA_3596: 11964 - HMMPfam-Phytanoyl-CoA dioxygenase (PhyH)-PF05721,SUPERFAMILY--SSF51197, at 131,256 to 132,687
11964
mRNA_3597: 11965 - K15562 BUR1, SGV1 serine/threonine-protein kinase BUR1, at 132,867 to 134,971
11965
Group
Condition
mRNA
_3593
mRNA
_3594
mRNA
_3595
mRNA
_3596
mRNA
_3597
11961
11962
11963
11964
11965
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.1
-0.0
-0.2
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.2
+0.1
-0.1
-1.0
growth on ypd
YPD
+0.2
-0.2
-0.0
+0.3
-1.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.4
-0.9
+0.5
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.2
-0.4
+0.1
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.0
-0.8
+0.4
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.4
-0.5
-0.0
+0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.1
-0.7
+0.3
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.3
-0.5
+0.4
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.0
-0.6
+0.1
+0.5
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
+0.1
-0.1
-0.0
auxotrophy
YNB Glucose
-0.1
-0.1
-0.2
-0.2
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.2
-0.3
+0.3
+0.7
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
-0.1
-0.0
+0.7
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.2
+0.1
+0.1
+0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.0
-0.8
+0.3
+1.2
growth on oleic acid
YNB Glucose
-0.3
-0.1
+0.5
+0.3
+0.5
auxotrophy
Dropout Complete
-0.5
+0.1
+0.2
+0.0
+1.2
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
+0.2
+0.4
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
+0.8
+0.6
-0.4
-0.0
growth on oleic acid
YNB Oleic Acid
-0.4
+0.1
+0.5
+0.3
+1.2
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