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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11962 and 11963 are separated by 398 nucleotides
11963 and 11964 are separated by 118 nucleotides
11964 and 11965 are separated by 179 nucleotides
11965 and 11966 are separated by 2287 nucleotides
mRNA_3594: 11962 - K01555 FAH, fahA fumarylacetoacetase, at 127,609 to 129,068
11962
mRNA_3595: 11963 - K09838 ZEP, ABA1 zeaxanthin epoxidase, at 129,467 to 131,137
11963
mRNA_3596: 11964 - HMMPfam-Phytanoyl-CoA dioxygenase (PhyH)-PF05721,SUPERFAMILY--SSF51197, at 131,256 to 132,687
11964
mRNA_3597: 11965 - K15562 BUR1, SGV1 serine/threonine-protein kinase BUR1, at 132,867 to 134,971
11965
mRNA_3598: 11966 - KOG2652 RNA polymerase II transcription initiation factor TFIIA, large chain, at 137,259 to 138,295
11966
Group
Condition
mRNA
_3594
mRNA
_3595
mRNA
_3596
mRNA
_3597
mRNA
_3598
11962
11963
11964
11965
11966
growth on ypd
YPD
-0.2
-0.0
+0.3
-1.3
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
-0.1
-1.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.0
-0.2
-0.5
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.8
+0.4
-0.4
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.4
+0.1
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.9
+0.5
+0.5
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.5
-0.0
+0.9
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.7
+0.3
+0.4
N.D.
auxotrophy
YNB Glucose
-0.1
-0.2
-0.2
+0.6
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.1
-0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.5
+0.4
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.6
+0.1
+0.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
-0.0
+0.7
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.3
+0.3
+0.7
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.8
+0.3
+1.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
+0.1
+0.7
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.8
+0.6
-0.4
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
+0.4
+0.4
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.5
+0.3
+0.5
N.D.
auxotrophy
Dropout Complete
+0.1
+0.2
+0.0
+1.2
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+0.5
+0.3
+1.2
N.D.
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