Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 11962 and 11963 are separated by 398 nucleotides11963 and 11964 are separated by 118 nucleotides11964 and 11965 are separated by 179 nucleotides11965 and 11966 are separated by 2287 nucleotides mRNA_3594: 11962 - K01555 FAH, fahA fumarylacetoacetase, at 127,609 to 129,068 11962 mRNA_3595: 11963 - K09838 ZEP, ABA1 zeaxanthin epoxidase, at 129,467 to 131,137 11963 mRNA_3596: 11964 - HMMPfam-Phytanoyl-CoA dioxygenase (PhyH)-PF05721,SUPERFAMILY--SSF51197, at 131,256 to 132,687 11964 mRNA_3597: 11965 - K15562 BUR1, SGV1 serine/threonine-protein kinase BUR1, at 132,867 to 134,971 11965 mRNA_3598: 11966 - KOG2652 RNA polymerase II transcription initiation factor TFIIA, large chain, at 137,259 to 138,295 11966
Group Condition mRNA_3594 mRNA_3595 mRNA_3596 mRNA_3597 mRNA_3598
11962 11963 11964 11965 11966
growth on ypd YPD -0.2 -0.0 +0.3 -1.3 N.D.
ypd buoyancy 40 hrs Median Buoyancy -0.2 +0.1 -0.1 -1.0 N.D.
ypd buoyancy 40 hrs Low Buoyancy -0.1 -0.0 -0.2 -0.5 N.D.
facs on lipid accumulation Sorted Low BODIPY Gate -0.0 -0.8 +0.4 -0.4 N.D.
facs on lipid accumulation Sorted No BODIPY Gate +0.2 -0.4 +0.1 -0.6 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.4 -0.9 +0.5 +0.5 N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.4 -0.5 -0.0 +0.9 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 -0.7 +0.3 +0.4 N.D.
auxotrophy YNB Glucose -0.1 -0.2 -0.2 +0.6 N.D.
ypd buoyancy 40 hrs High Buoyancy +0.1 +0.1 -0.1 -0.0 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.3 -0.5 +0.4 +0.4 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.0 -0.6 +0.1 +0.5 N.D.
auxotrophy YNB Glucose 75mM Methionine -0.2 -0.1 -0.0 +0.7 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 -0.3 +0.3 +0.7 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid +0.0 -0.8 +0.3 +1.2 N.D.
auxotrophy YNB Glucose 75mM Arginine -0.2 +0.1 +0.1 +0.7 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation +0.8 +0.6 -0.4 -0.0 N.D.
growth on ricinoleic acid YNB Glucose +0.1 +0.2 +0.4 +0.4 N.D.
growth on oleic acid YNB Glucose -0.1 +0.5 +0.3 +0.5 N.D.
auxotrophy Dropout Complete +0.1 +0.2 +0.0 +1.2 N.D.
growth on oleic acid YNB Oleic Acid +0.1 +0.5 +0.3 +1.2 N.D.
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