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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11966 and 11967 are separated by 217 nucleotides
11967 and 11968 are separated by 612 nucleotides
11968 and 11969 are separated by 927 nucleotides
11969 and 11970 are separated by 505 nucleotides
mRNA_3598: 11966 - KOG2652 RNA polymerase II transcription initiation factor TFIIA, large chain, at 137,259 to 138,295
11966
mRNA_3599: 11967 - K02134 ATPeF1D, ATP5D, ATP16 F-type H+-transporting ATPase subunit delta, at 138,513 to 139,861
11967
mRNA_3600: 11968 - HMMPfam-PWWP domain-PF00855,ProSiteProfiles-PWWP domain profile.-PS50812,SMART-domain with conserved PWWP motif-SM00293,SUPERFAMILY--SSF63748, at 140,474 to 142,309
11968
mRNA_3601: 11969 - K11367 CHD1 chromodomain-helicase-DNA-binding protein 1, at 143,237 to 148,837
11969
mRNA_3602: 11970 - K10839 RAD23, HR23 UV excision repair protein RAD23, at 149,343 to 150,921
11970
Group
Condition
mRNA
_3598
mRNA
_3599
mRNA
_3600
mRNA
_3601
mRNA
_3602
11966
11967
11968
11969
11970
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-2.0
-1.8
-0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
-2.6
-0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.4
-3.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-2.7
-0.9
+0.2
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.6
-2.3
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-1.5
-1.0
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.3
-2.5
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.5
-1.8
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-1.7
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.3
-2.0
+0.5
growth on ypd
YPD
N.D.
N.D.
+1.7
-2.9
-0.3
auxotrophy
YNB Glucose
N.D.
N.D.
-0.9
-0.6
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.3
-0.9
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.3
-0.7
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.6
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-1.1
+0.5
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-1.0
+0.6
-0.0
auxotrophy
Dropout Complete
N.D.
N.D.
-0.2
-0.0
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.3
+0.7
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.3
+0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
+0.2
+0.3
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