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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11973 and 11974 are separated by 138 nucleotides
11974 and 11975 are separated by 115 nucleotides
11975 and 11976 are separated by 665 nucleotides
11976 and 11977 are separated by 375 nucleotides
mRNA_3605: 11973 - K01872 AARS, alaS alanyl-tRNA synthetase, at 154,792 to 158,003
11973
mRNA_3606: 11974 - HMMPfam-Tho complex subunit 7-PF05615, at 158,142 to 159,312
11974
mRNA_3607: 11975 - BLAST putative transmembrane protein [Rhizoctonia solani 123E], at 159,428 to 160,353
11975
mRNA_3608: 11976 - Hypothetical Protein, at 161,019 to 162,088
11976
mRNA_3609: 11977 - K00235 SDHB, SDH2 succinate dehydrogenase (ubiquinone) iron-sulfur subunit, at 162,464 to 163,802
11977
Group
Condition
mRNA
_3605
mRNA
_3606
mRNA
_3607
mRNA
_3608
mRNA
_3609
11973
11974
11975
11976
11977
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-2.6
-1.8
-0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-2.4
+0.2
-0.3
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-1.8
-0.4
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-1.4
-0.4
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-1.5
-0.2
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-1.0
-0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
-0.7
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.4
-0.4
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.1
-0.9
-0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.0
-0.8
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
-1.0
-0.0
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
-0.4
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
-0.3
-0.2
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.4
+0.0
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.3
-0.2
-0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.0
-0.0
+0.0
N.D.
auxotrophy
Dropout Complete
N.D.
+0.2
-0.2
-0.1
N.D.
auxotrophy
YNB Glucose
N.D.
+0.5
-0.2
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
+0.2
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.5
-0.2
+0.1
N.D.
growth on ypd
YPD
N.D.
+0.3
-0.1
+0.2
N.D.
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