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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11976 and 11977 are separated by 375 nucleotides
11977 and 11978 are separated by 878 nucleotides
11978 and 11979 are separated by 98 nucleotides
11979 and 11980 are separated by 28 nucleotides
mRNA_3608: 11976 - Hypothetical Protein, at 161,019 to 162,088
11976
mRNA_3609: 11977 - K00235 SDHB, SDH2 succinate dehydrogenase (ubiquinone) iron-sulfur subunit, at 162,464 to 163,802
11977
mRNA_3610: 11978 - K09567 PPIH, CYPH peptidyl-prolyl isomerase H (cyclophilin H), at 164,681 to 165,477
11978
mRNA_3611: 11979 - Hypothetical Protein, at 165,576 to 165,896
11979
mRNA_3612: 11980 - Hypothetical Protein, at 165,925 to 166,786
11980
Group
Condition
mRNA
_3608
mRNA
_3609
mRNA
_3610
mRNA
_3611
mRNA
_3612
11976
11977
11978
11979
11980
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
N.D.
-0.7
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
N.D.
N.D.
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
N.D.
-0.4
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
N.D.
-0.9
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
N.D.
N.D.
-0.3
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
N.D.
-0.2
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
N.D.
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
N.D.
-0.3
+0.1
growth on oleic acid
YNB Glucose
+0.0
N.D.
N.D.
-0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
N.D.
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
N.D.
-0.6
+0.1
growth on ricinoleic acid
YNB Glucose
-0.2
N.D.
N.D.
+0.2
-0.1
auxotrophy
Dropout Complete
-0.1
N.D.
N.D.
-0.3
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
N.D.
+0.1
+0.2
auxotrophy
YNB Glucose
-0.1
N.D.
N.D.
-0.4
+0.4
growth on oleic acid
YNB Oleic Acid
+0.3
N.D.
N.D.
-0.4
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
N.D.
-0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
N.D.
+0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
N.D.
+0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
N.D.
N.D.
+0.3
+0.5
growth on ypd
YPD
+0.2
N.D.
N.D.
+0.6
+0.1
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