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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11978 and 11979 are separated by 98 nucleotides
11979 and 11980 are separated by 28 nucleotides
11980 and 11981 are separated by 144 nucleotides
11981 and 11982 are separated by 206 nucleotides
mRNA_3610: 11978 - K09567 PPIH, CYPH peptidyl-prolyl isomerase H (cyclophilin H), at 164,681 to 165,477
11978
mRNA_3611: 11979 - Hypothetical Protein, at 165,576 to 165,896
11979
mRNA_3612: 11980 - Hypothetical Protein, at 165,925 to 166,786
11980
mRNA_3613: 11981 - K09518 DNAJB12 DnaJ homolog subfamily B member 12, at 166,931 to 168,714
11981
mRNA_3614: 11982 - K00844 HK hexokinase, at 168,921 to 171,273
11982
Group
Condition
mRNA
_3610
mRNA
_3611
mRNA
_3612
mRNA
_3613
mRNA
_3614
11978
11979
11980
11981
11982
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.9
-0.0
-0.3
-0.7
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.6
+0.1
-0.5
-0.7
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.2
+0.1
-0.5
-0.5
auxotrophy
YNB Glucose
N.D.
-0.4
+0.4
-0.6
-0.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
-0.1
-0.2
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.3
-0.4
+0.3
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
+0.2
-0.2
-0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.3
-0.4
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
-0.3
+0.4
-0.2
auxotrophy
Dropout Complete
N.D.
-0.3
+0.3
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.7
-0.4
+0.8
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
-0.1
+0.1
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.2
-0.2
+0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
+0.1
+0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
-0.1
+0.1
+0.1
growth on oleic acid
YNB Glucose
N.D.
-0.2
-0.2
+0.4
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.0
-0.1
+0.3
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.0
-0.1
+0.3
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
-0.4
+0.1
+0.7
+0.0
growth on ypd
YPD
N.D.
+0.6
+0.1
+0.3
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.3
+0.5
-0.1
+0.3
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