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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
11983 and 11984 are separated by 364 nucleotides
11984 and 11985 are separated by 748 nucleotides
11985 and 11986 are separated by 676 nucleotides
11986 and 11987 are separated by 288 nucleotides
mRNA_3615: 11983 - KOG3223 Uncharacterized conserved protein, at 171,403 to 172,846
11983
mRNA_3616: 11984 - K11600 RRP41, EXOSC4, SKI6 exosome complex component RRP41, at 173,211 to 174,376
11984
mRNA_3617: 11985 - KOG0254 Predicted transporter (major facilitator superfamily), at 175,125 to 177,580
11985
mRNA_3618: 11986 - HMMPfam-Cupin domain-PF07883,SUPERFAMILY--SSF51182, at 178,257 to 178,945
11986
mRNA_3619: 11987 - HMMPfam-X-Pro dipeptidyl-peptidase (S15 family)-PF02129,HMMPfam-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-PF08530,SMART-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-SM00939,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF53474,TIGRFAM-/NonD hydrolase CocE/NonD family protein-TIGR00976, at 179,234 to 181,455
11987
Group
Condition
mRNA
_3615
mRNA
_3616
mRNA
_3617
mRNA
_3618
mRNA
_3619
11983
11984
11985
11986
11987
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.1
-0.1
-0.9
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.1
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.6
+0.1
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
+0.5
-0.4
auxotrophy
Dropout Complete
N.D.
N.D.
+0.3
+0.1
-0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
-0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.1
+0.1
-0.0
growth on ypd
YPD
N.D.
N.D.
-0.3
+0.5
-0.0
auxotrophy
YNB Glucose
N.D.
N.D.
+0.5
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.4
+0.5
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.1
-0.2
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.5
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
+0.5
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
+0.0
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.4
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.2
+0.6
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.1
+0.3
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.8
+0.2
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.2
+0.4
+0.4
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.0
+0.5
+0.7
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.7
-0.4
+1.1
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